1d3b
From Proteopedia
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|PDB= 1d3b |SIZE=350|CAPTION= <scene name='initialview01'>1d3b</scene>, resolution 2.00Å | |PDB= 1d3b |SIZE=350|CAPTION= <scene name='initialview01'>1d3b</scene>, resolution 2.00Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene> | + | |LIGAND= <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY= | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1d3b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1d3b OCA], [http://www.ebi.ac.uk/pdbsum/1d3b PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1d3b RCSB]</span> | ||
}} | }} | ||
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==Overview== | ==Overview== | ||
The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F, and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs (snRNAs). These proteins share a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. Crystal structures of two Sm protein complexes, D3B and D1D2, show that these proteins have a common fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta sheet, and the D1D2 and D3B dimers superpose closely in their core regions, including the dimer interfaces. The crystal structures suggest that the seven Sm proteins could form a closed ring and the snRNAs may be bound in the positively charged central hole. | The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F, and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs (snRNAs). These proteins share a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. Crystal structures of two Sm protein complexes, D3B and D1D2, show that these proteins have a common fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta sheet, and the D1D2 and D3B dimers superpose closely in their core regions, including the dimer interfaces. The crystal structures suggest that the seven Sm proteins could form a closed ring and the snRNAs may be bound in the positively charged central hole. | ||
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| - | ==Disease== | ||
| - | Known diseases associated with this structure: Cone dystrophy-1 OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=312610 312610]], Cone-rod dystrophy OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=312610 312610]], Macular degeneration, X-linked atrophic OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=312610 312610]], Retinitis pigmentosa, X-linked with deafness and sinorespiratory infections OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=312610 312610]], Retinitis pigmentosa, X-linked, with recurrent respiratory infections OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=312610 312610]], Retinitis pigmentosa-3 OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=312610 312610]] | ||
==About this Structure== | ==About this Structure== | ||
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[[Category: Nagai, K.]] | [[Category: Nagai, K.]] | ||
[[Category: Walke, S.]] | [[Category: Walke, S.]] | ||
| - | [[Category: CIT]] | ||
| - | [[Category: GOL]] | ||
[[Category: core snrnp domain]] | [[Category: core snrnp domain]] | ||
[[Category: rna binding protein]] | [[Category: rna binding protein]] | ||
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[[Category: systemic lupus erythematosus]] | [[Category: systemic lupus erythematosus]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 19:33:45 2008'' |
Revision as of 16:33, 30 March 2008
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| , resolution 2.00Å | |||||||
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| Ligands: | , | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
CRYSTAL STRUCTURE OF THE D3B SUBCOMPLEX OF THE HUMAN CORE SNRNP DOMAIN AT 2.0A RESOLUTION
Overview
The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F, and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs (snRNAs). These proteins share a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. Crystal structures of two Sm protein complexes, D3B and D1D2, show that these proteins have a common fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta sheet, and the D1D2 and D3B dimers superpose closely in their core regions, including the dimer interfaces. The crystal structures suggest that the seven Sm proteins could form a closed ring and the snRNAs may be bound in the positively charged central hole.
About this Structure
1D3B is a Protein complex structure of sequences from Homo sapiens. Full crystallographic information is available from OCA.
Reference
Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs., Kambach C, Walke S, Young R, Avis JM, de la Fortelle E, Raker VA, Luhrmann R, Li J, Nagai K, Cell. 1999 Feb 5;96(3):375-87. PMID:10025403
Page seeded by OCA on Sun Mar 30 19:33:45 2008
