1djo
From Proteopedia
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|SITE= | |SITE= | ||
|LIGAND= <scene name='pdbligand=CAB:4-CARBOXY-4-AMINOBUTANAL'>CAB</scene> | |LIGAND= <scene name='pdbligand=CAB:4-CARBOXY-4-AMINOBUTANAL'>CAB</scene> | ||
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Glutamin-(asparagin-)ase Glutamin-(asparagin-)ase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.38 3.5.1.38] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutamin-(asparagin-)ase Glutamin-(asparagin-)ase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.38 3.5.1.38] </span> |
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[4pga|4PGA]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1djo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1djo OCA], [http://www.ebi.ac.uk/pdbsum/1djo PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1djo RCSB]</span> | ||
}} | }} | ||
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[[Category: Lewinski, K.]] | [[Category: Lewinski, K.]] | ||
[[Category: Ortlund, E.]] | [[Category: Ortlund, E.]] | ||
| - | [[Category: CAB]] | ||
[[Category: 5-diazo-4-oxo-l-norvaline]] | [[Category: 5-diazo-4-oxo-l-norvaline]] | ||
[[Category: asparaginase]] | [[Category: asparaginase]] | ||
| Line 37: | Line 39: | ||
[[Category: suicide inhibitor]] | [[Category: suicide inhibitor]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 19:42:48 2008'' |
Revision as of 16:42, 30 March 2008
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| , resolution 2.00Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Activity: | Glutamin-(asparagin-)ase, with EC number 3.5.1.38 | ||||||
| Related: | 4PGA
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
CRYSTAL STRUCTURE OF PSEUDOMONAS 7A GLUTAMINASE-ASPARAGINASE WITH THE INHIBITOR DONV COVALENTLY BOUND IN THE ACTIVE SITE
Overview
Pseudomonas 7A glutaminase-asparaginase (PGA) catalyzes the hydrolysis of D and L isomers of glutamine and asparagine. Crystals of PGA were reacted with diazo analogues of glutamine (6-diazo-5-oxo-L-norleucine, DON) and asparagine (5-diazo-4-oxo-L-norvaline, DONV), which are known inhibitors of the enzyme. The derivatized crystals remained isomorphous to native PGA crystals. Their structures were refined to crystallographic R = 0.20 and R(free) = 0.24 for PGA-DON and R = 0.19 and R = 0.23 for PGA-DONV. Difference Fourier electron density maps clearly showed that both DON and DONV inactivate PGA through covalent inhibition. Continuous electron density connecting the inhibitor to both Thr20 and Tyr34 of the flexible loop was observed providing strong evidence that Thr20 is the primary catalytic nucleophile and that Tyr34 plays an important role in catalysis as well. The unexpected covalent binding observed in the PGA-DON and PGA-DONV complexes shows that a secondary reaction involving the formation of a Tyr34-inhibitor bond takes place with concomitant inactivation of PGA. The predicted covalent linkage is not seen, however, suggesting an alternative method of inhibition not yet seen for these diazo analogues. These surprising results give insight as to the role of the flexible loop Thr and Tyr in the catalytic mechanism.
About this Structure
1DJO is a Single protein structure of sequence from Pseudomonas sp.. Full crystallographic information is available from OCA.
Reference
Reactions of Pseudomonas 7A glutaminase-asparaginase with diazo analogues of glutamine and asparagine result in unexpected covalent inhibitions and suggests an unusual catalytic triad Thr-Tyr-Glu., Ortlund E, Lacount MW, Lewinski K, Lebioda L, Biochemistry. 2000 Feb 15;39(6):1199-204. PMID:10684596
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