1dpo
From Proteopedia
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|PDB= 1dpo |SIZE=350|CAPTION= <scene name='initialview01'>1dpo</scene>, resolution 1.59Å | |PDB= 1dpo |SIZE=350|CAPTION= <scene name='initialview01'>1dpo</scene>, resolution 1.59Å | ||
|SITE= <scene name='pdbsite=CAT:Catalytic+Triad'>CAT</scene> | |SITE= <scene name='pdbsite=CAT:Catalytic+Triad'>CAT</scene> | ||
| - | |LIGAND= <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span> |
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY= | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dpo OCA], [http://www.ebi.ac.uk/pdbsum/1dpo PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1dpo RCSB]</span> | ||
}} | }} | ||
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[[Category: Trypsin]] | [[Category: Trypsin]] | ||
[[Category: Stroud, R M.]] | [[Category: Stroud, R M.]] | ||
| - | [[Category: BEN]] | ||
| - | [[Category: CA]] | ||
| - | [[Category: SO4]] | ||
[[Category: digestion]] | [[Category: digestion]] | ||
[[Category: hydrolase]] | [[Category: hydrolase]] | ||
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[[Category: zymogen]] | [[Category: zymogen]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 19:46:14 2008'' |
Revision as of 16:46, 30 March 2008
| |||||||
| , resolution 1.59Å | |||||||
|---|---|---|---|---|---|---|---|
| Sites: | |||||||
| Ligands: | , , | ||||||
| Activity: | Trypsin, with EC number 3.4.21.4 | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
STRUCTURE OF RAT TRYPSIN
Overview
The structure of a rat trypsin mutant [S195C] at a temperature of 120 K has been refined to a crystallographic R factor of 17.4% between 12.0 and 1.59 A and is compared with the structure of the D102N mutant at 295 K. A reduction in the unit cell dimensions in going from room temperature to low temperature is accompanied by a decrease in molecular surface area and radius of gyration. The overall structure remains similar to that at room temperature. The attainable resolution appears to be improved due to the decrease in the fall off of intensities with resolution [reduction of the temperature factor]. This decreases the uncertainty in the atomic positions and allows the localization of more protein atoms and solvent molecules in the low temperature map. The largest differences between the two models occur at residues with higher than average temperature factors. Several features can be localized in the solvent region of the 120 K map that are not seen in the 295 K map. These include several more water molecules as well as an interstitial sulfate ion and two interstitial benzamidine molecules.
About this Structure
1DPO is a Single protein structure of sequence from Rattus rattus. Full crystallographic information is available from OCA.
Reference
1.59 A structure of trypsin at 120 K: comparison of low temperature and room temperature structures., Earnest T, Fauman E, Craik CS, Stroud R, Proteins. 1991;10(3):171-87. PMID:1881877
Page seeded by OCA on Sun Mar 30 19:46:14 2008
Categories: Rattus rattus | Single protein | Trypsin | Stroud, R M. | Digestion | Hydrolase | Multigene family | Pancrea | Serine protease | Signal | Zymogen
