1e0c
From Proteopedia
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|PDB= 1e0c |SIZE=350|CAPTION= <scene name='initialview01'>1e0c</scene>, resolution 1.8Å | |PDB= 1e0c |SIZE=350|CAPTION= <scene name='initialview01'>1e0c</scene>, resolution 1.8Å | ||
|SITE= <scene name='pdbsite=CSS:In+Native+Crystals,+The+Sg+Atom+Of+Cys230+Forms+A+Persul+...'>CSS</scene> | |SITE= <scene name='pdbsite=CSS:In+Native+Crystals,+The+Sg+Atom+Of+Cys230+Forms+A+Persul+...'>CSS</scene> | ||
| - | |LIGAND= <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=CSS:S-MERCAPTOCYSTEINE'>CSS</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Thiosulfate_sulfurtransferase Thiosulfate sulfurtransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.1.1 2.8.1.1] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Thiosulfate_sulfurtransferase Thiosulfate sulfurtransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.1.1 2.8.1.1] </span> |
|GENE= RHDA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=354 Azotobacter vinelandii]) | |GENE= RHDA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=354 Azotobacter vinelandii]) | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY= | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1e0c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e0c OCA], [http://www.ebi.ac.uk/pdbsum/1e0c PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1e0c RCSB]</span> | ||
}} | }} | ||
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[[Category: Deriu, D.]] | [[Category: Deriu, D.]] | ||
[[Category: Pagani, S.]] | [[Category: Pagani, S.]] | ||
| - | [[Category: EDO]] | ||
| - | [[Category: MG]] | ||
| - | [[Category: SO4]] | ||
[[Category: sulfur metabolism]] | [[Category: sulfur metabolism]] | ||
[[Category: sulfurtransferase]] | [[Category: sulfurtransferase]] | ||
[[Category: thiosulfate:cyanide sulfurtransferase]] | [[Category: thiosulfate:cyanide sulfurtransferase]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 19:52:25 2008'' |
Revision as of 16:52, 30 March 2008
| |||||||
| , resolution 1.8Å | |||||||
|---|---|---|---|---|---|---|---|
| Sites: | |||||||
| Ligands: | , , , | ||||||
| Gene: | RHDA (Azotobacter vinelandii) | ||||||
| Activity: | Thiosulfate sulfurtransferase, with EC number 2.8.1.1 | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
SULFURTRANSFERASE FROM AZOTOBACTER VINELANDII
Overview
Rhodanese is an ubiquitous enzyme that in vitro catalyses the transfer of a sulfur atom from suitable donors to nucleophilic acceptors by way of a double displacement mechanism. During the catalytic process the enzyme cycles between a sulfur-free and a persulfide-containing form, via formation of a persulfide linkage to a catalytic Cys residue. In the nitrogen-fixing bacteria Azotobacter vinelandii the rhdA gene has been identified and the encoded protein functionally characterized as a rhodanese. The crystal structure of the A. vinelandii rhodanese has been determined and refined at 1.8 A resolution in the sulfur-free and persulfide-containing forms. Conservation of the overall three-dimensional fold of bovine rhodanese is observed, with substantial modifications of the protein structure in the proximity of the catalytic residue Cys230. Remarkably, the native enzyme is found as the Cys230-persulfide form; in the sulfur-free state the catalytic Cys residue adopts two alternate conformations, reflected by perturbation of the neighboring active-site residues, which is associated with a partly reversible loss of thiosulfate:cyanide sulfurtransferase activity. The catalytic mechanism of A. vinelandii rhodanese relies primarily on the main-chain conformation of the 230 to 235 active-site loop and on a surrounding strong positive electrostatic field. Substrate recognition is based on residues which are entirely different in the prokaryotic and eukaryotic enzymes. The active-site loop of A. vinelandii rhodanese displays striking structural similarity to the active-site loop of the similarly folded catalytic domain of dual specific phosphatase Cdc25, suggesting a common evolutionary origin of the two enzyme families.
About this Structure
1E0C is a Single protein structure of sequence from Azotobacter vinelandii. Full crystallographic information is available from OCA.
Reference
The crystal structure of a sulfurtransferase from Azotobacter vinelandii highlights the evolutionary relationship between the rhodanese and phosphatase enzyme families., Bordo D, Deriu D, Colnaghi R, Carpen A, Pagani S, Bolognesi M, J Mol Biol. 2000 May 12;298(4):691-704. PMID:10788330
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