1fv7
From Proteopedia
| Line 4: | Line 4: | ||
|PDB= 1fv7 |SIZE=350|CAPTION= <scene name='initialview01'>1fv7</scene> | |PDB= 1fv7 |SIZE=350|CAPTION= <scene name='initialview01'>1fv7</scene> | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=CH3:METHYL GROUP'>CH3</scene> | + | |LIGAND= <scene name='pdbligand=CH3:METHYL+GROUP'>CH3</scene>, <scene name='pdbligand=DC:2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DFC:2'-DEOXY-L-RIBO-FURANOSYL+CYTOSINE-5'-MONOPHOSPHATE'>DFC</scene>, <scene name='pdbligand=DFG:2'-DEOXY-L-RIBO-FURANOSYL+GUANINE-5'-MONOPHOSPHATE'>DFG</scene>, <scene name='pdbligand=DG:2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE'>DG</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY= | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fv7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fv7 OCA], [http://www.ebi.ac.uk/pdbsum/1fv7 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1fv7 RCSB]</span> | ||
}} | }} | ||
| Line 27: | Line 30: | ||
[[Category: Santamaria, F.]] | [[Category: Santamaria, F.]] | ||
[[Category: Tevanian, G]] | [[Category: Tevanian, G]] | ||
| - | [[Category: CH3]] | ||
[[Category: antisense]] | [[Category: antisense]] | ||
[[Category: dna polymorphism]] | [[Category: dna polymorphism]] | ||
[[Category: l enantiomery]] | [[Category: l enantiomery]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 20:30:56 2008'' |
Revision as of 17:30, 30 March 2008
| |||||||
| Ligands: | , , , , | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
A TWO B-Z JUNCTION CONTAINING DNA RESOLVES INTO AN ALL RIGHT HANDED DOUBLE HELIX
Overview
Natural and artificial oligonucleotides are capable of assuming many different conformations and functions. Here we present results of an NMR restrained molecular modelling study on the conformational preferences of the modified decanucleotide d((m)C1G2(m)C3G4C5(L)G6(L)(m)C7G8(m)C9G10) .d((m)C11G12(m)C13G14C15(L)G (L)16(m)C17-G18(m)C19G20 ) which contains L deoxynucleotides in its centre. This chimeric DNA was expected to form a right-left-right-handed B-type double-helix (BB*B) at low salt concentration. Actually, it matured into a fully right-handed double helix with its central C(L)pG(L) core forming a right-handed Z-DNA helix embedded in a B-DNA matrix (BZ*B). The interplay between base-base and base-sugar stackings within the core and its immediately adjacent residues was found to be critical in ensuring the stabilisation of the right-handed helix. The structure could serve as a model for the design of antisense oligonucleotides resistant to nucleases and capable of hybridising to natural DNAs and RNAs.
About this Structure
1FV7 is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
A two B-Z junction containing DNA resolves into an all right-handed double-helix., Mauffret O, El Amri C, Santamaria F, Tevanian G, Rayner B, Fermandjian S, Nucleic Acids Res. 2000 Nov 15;28(22):4403-9. PMID:11071926
Page seeded by OCA on Sun Mar 30 20:30:56 2008
