5eoc

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'''Unreleased structure'''
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==Crystal structure of Fab C2 in complex with a Cyclic variant of Hepatitis C Virus E2 epitope I==
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<StructureSection load='5eoc' size='340' side='right' caption='[[5eoc]], [[Resolution|resolution]] 1.98&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5eoc]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EOC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5EOC FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5eoc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eoc OCA], [http://pdbe.org/5eoc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5eoc RCSB], [http://www.ebi.ac.uk/pdbsum/5eoc PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Hepatitis C virus (HCV) E2 envelope glycoprotein is crucial for virus entry into hepatocytes. A conserved region of E2 encompassing amino acids 412-423 and containing Trp420, a residue critical for virus entry, is recognized by several broadly neutralizing antibodies. Peptides embodying this epitope I sequence adopt a beta-hairpin conformation when bound to neutralizing monoclonal antibodies (MAbs) AP33 and HCV-1. We therefore generated new mouse MAbs that were able to bind to a cyclic peptide containing E2 residues 412-422 (C-Epitope I) but not to the linear counterpart. These MAbs bound to purified E2 with affinities of about 50 nM, but they were unable to neutralize virus infection. Structural analysis of the complex between C-Epitope I and one of our MAbs (C2) show that the Trp420 side chain is largely buried in the combining site and that the Asn417 side chain, which is glycosylated in E2 and solvent-exposed in other complexes, is slightly buried upon C2 binding. Also, the orientation of the cyclic peptide in the antibody combining site is rotated by 180 degrees compared to other complexes. All these structural features, however, do not explain the lack of neutralization activity. This is instead ascribed to the high selectivity of the new MAbs for the cyclic epitope and to their inability to interact with the epitope in more flexible and extended conformations, which recent data suggest play a role in the mechanisms of neutralization escape. IMPORTANCE: Hepatitis C virus (HCV) remains a major health care burden affecting almost 3% of the global population. The conserved epitope I comprising residues 412-423 of the viral E2 glycoprotein, is a valid vaccine candidate because antibodies recognizing this region exhibit potent neutralizing activity. This epitope adopts a beta-hairpin conformation when bound to neutralizing MAbs. We explored the potential of cyclic peptides mimicking this structure to elicit anti-HCV antibodies. MAbs that specifically recognize a cyclic variant of the epitope bind to soluble E2 with lower affinity than other blocking antibodies and don't neutralize virus. The structure of the complex between one such MAb and the cyclic epitope, together with new structural data showing the linear peptide bound to neutralizing MAbs in extended conformations, suggests that the epitope displays a conformational flexibility that contributes to neutralization escape. Such features can be of major importance for the design of epitope-based anti-HCV vaccines.
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The entry 5eoc is ON HOLD
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Generation and characterization of monoclonal antibodies against a cyclic variant of Hepatitis C Virus E2 epitope 412-422.,Sandomenico A, Leonardi A, Berisio R, Sanguigno L, Foca G, Foca A, Ruggiero A, Doti N, Muscariello L, Barone D, Farina C, Owsianka A, Vitagliano L, Patel AH, Ruvo M J Virol. 2016 Jan 27. pii: JVI.02397-15. PMID:26819303<ref>PMID:26819303</ref>
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Authors: Berisio, R., Ruggiero, A., Sandomenico, A., Patel, A.H., Ruvo, M., Vitagliano, L.
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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Description: Crystal structure of Fab C2 in complex with a Cyclic variant of Hepatitis C Virus E2 epitope I
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<div class="pdbe-citations 5eoc" style="background-color:#fffaf0;"></div>
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[[Category: Unreleased Structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Mus musculus]]
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[[Category: Berisio, R]]
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[[Category: Patel, A H]]
[[Category: Ruggiero, A]]
[[Category: Ruggiero, A]]
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[[Category: Vitagliano, L]]
 
[[Category: Ruvo, M]]
[[Category: Ruvo, M]]
[[Category: Sandomenico, A]]
[[Category: Sandomenico, A]]
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[[Category: Berisio, R]]
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[[Category: Vitagliano, L]]
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[[Category: Patel, A.H]]
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[[Category: Complex]]
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[[Category: Hcv]]
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[[Category: Immune system]]
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[[Category: Monoclonal antibody]]

Revision as of 17:12, 10 February 2016

Crystal structure of Fab C2 in complex with a Cyclic variant of Hepatitis C Virus E2 epitope I

5eoc, resolution 1.98Å

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