Transfer RNA (tRNA)

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__NOTOC__
__NOTOC__
==3D Structures of tRNA==
==3D Structures of tRNA==
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===Free tRNA===
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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
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====yeast phenylalanine tRNA====
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{{#tree:id=OrganizedByTopic|openlevels=0|
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* [[1ehz]]
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* [[1evv]]
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* [[1tra]]
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* [[4tra]]
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* [[4tna]]
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* [[6tna]]
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====human lysine tRNA (primer of HIV1 reverse transcription)====
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* [[1fir]]
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====yeast aspartic acid tRNA====
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* [[2tra]]
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* [[3tra]]
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====''E. coli'' initiatior methionine tRNA====
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* [[3cw5]]
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* [[3cw6]]
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===tRNA fragments===
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* [[1bz2]]
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* [[1bz3]]
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* [[1bzt]]
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* [[1bzu]]
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* [[1feq]]
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* [[1fl8]]
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* [[2jrq]]
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* [[3ova]]
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===Complexes with aminoacyl-tRNA synthetases===
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* [[1wz2]]
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* [[1efw]]
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* [[1gax]]
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* [[1j1u]]
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* [[1gtr]]
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===Complexes with elongation factors===
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* [[1ttt]]
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===Complex with RNAse P===
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* [[3ok7]]
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===Complexes with the ribosome===
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* [[3f1h]]
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* [[486d]]
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*Ala-tRNA
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**[[3wqy]], [[3wqz]] – AfRNA + Ala-tRNA synthetase – Archaeoglobus fulgidus<br />
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*Arg-tRNA
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**[[1f7u]], [[1f7v]] – yRNA + Arg-tRNA synthetase + Arg - yeast<br />
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**[[4x4n]], [[4x4p]], [[4x4t]], [[4x4u]] – AfRNA minihelix + CCA adding enzyme <br />
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**[[4x4o]], [[4x4q]], [[4x4r]], [[4x4s]], [[4x4v]] – AfRNA minihelix + CCA adding enzyme + nucleotide<br />
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*Asn-tRNA
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**[[3kfu]] – TtRNA + Glu-tRNA amidotransferase – Thermus thermophilus <br />
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**[[4wj4]] – PaRNA + Asp-tRNA synthetase + Asp - Pseudomonas aeruginosa <br />
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*Asp-tRNA
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**[[1eqr]] – EcRNA – Escherichia coli <br />
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**[[1vtq]] – yRNA <br />
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**[[1asy]], [[1asz]] – yRNA + Asp-tRNA synthetase <br />
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**[[1efw]] – EcRNA + Asp-tRNA synthetase <br />
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**[[1c0a]] – EcRNA + Asp-tRNA synthetase + Asp-AMP<br />
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**[[1il2]] – yRNA + Asp-tRNA synthetase + Asp-AMP<br />
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*Cys-tRNA
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**[[1u0b]] – EcRNA + Cys-tRNA synthetase <br />
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**[[2du3]], [[2du4]], [[2du5]], [[2du6]] – AfRNA + phosphoSer-tRNA synthetase <br />
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**[[2zzn]] – MjRNA + ATRM5 - Methanococcus jannaschii <br />
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*Sec-tRNA (selenocysteine-tRNA)
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**[[3rg5]] – RNA – mouse<br />
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**[[3a3a]] – hRNA – human<br />
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**[[3hl2]] – hRNA + phosphoSer-tRNA synthetase <br />
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**[[4rqe]], [[4rqf]] – hRNA + Ser-tRNA synthetase <br />
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**[[3adb]], [[3adc]], [[3add]] – MjRNA + phosphoSer-tRNA synthetase + AMPPNP<br />
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**[[3w3s]] – AaRNA + Ser-tRNA synthetase - Aquifex aeolicus <br />
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**[[3w1k]] – EcRNA + Sec-tRNA synthetase <br />
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 +
*Glu-tRNA
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**[[1gtr]], [[1gts]] – EcRNA + Glu-tRNA synthetase <br />
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**[[1g59]] – TtRNA + Glu-tRNA synthetase <br />
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**[[1n77]] – TtRNA + Glu-tRNA synthetase + ATP<br />
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**[[2cv0]] – TtRNA + Glu-tRNA synthetase + Glu<br />
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**[[2cv2]] – TtRNA + Glu-tRNA synthetase + Glu-AMS<br />
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**[[2cv1]] – TtRNA + Glu-tRNA synthetase + ATP + Glu<br />
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**[[1n78]], [[2dxi]] – TtRNA + Glu-tRNA synthetase + glutamol-ATP<br />
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**[[2d6f]] – RNA + Glu-tRNA amidotransferase – Methanothermobacter thermautotrophicus<br />
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**[[2der]], [[2det]], [[2deu]] – EcRNA + MNMA <br />
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*Gln-tRNA
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**[[1qrs]], [[1qrt]], [[1qru]], [[1qtq]], [[1exd]], [[1euq]], [[1euy]] – EcRNA + Gln-tRNA synthetase <br />
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**[[1zjw]] – EcRNA + Gln-tRNA synthetase + Gln<br />
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**[[4jxx]], [[4jxz]], [[4jyz]] – EcRNA + Gln-tRNA synthetase + ATP<br />
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**[[3akz]] – TmRNA + Gln-tRNA synthetase + Glu-AMP – Thermotoga maritima<br />
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**[[3al0]] - TmRNA + Glu-tRNA amidotransferase<br />
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*Gly-tRNA
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**[[4mgm]] – GkRNA – Geobacillus kaustophilus<br />
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**[[4mgn]] – GkRNA + T-box riboswitch<br />
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**[[4lck]], [[4tzp]], [[4tzv]], [[4tzw]] – BsRNA + ribosomal protein YBXF + T-box riboswitch – Bacillus subtilis<br />
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**[[4kr2]], [[4kr3]] – hRNA + Gly-tRNA synthetase <br />
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*His-tRNA
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**[[3wc1]], [[3wc2]] – RNA + His-tRNA-specific guanylyltransferase – Candida albicans<br />
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**[[4rdx]] – TtRNA + His-tRNA synthetase <br />
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*Ile-tRNA
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**[[1qu2]], [[1qu3]], [[1ffy]] – RNA + Ile-tRNA synthetase – Staphylococcus aureus<br />
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**[[3a2k]] – RNA + Ile-tRNA synthetase – Geobacillus kaustophilus<br />
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*Leu-tRNA
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**[[1wz2]] – PhRNA + Leu-tRNA synthetase – Pyrococcus horikoshii<br />
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**[[2bte]], [[2byt]] – TtRNA + Leu-tRNA synthase <br />
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**[[2v0g]] – TtRNA + Leu-tRNA synthase + antifungal agent<br />
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**[[2nqp]], [[2nr0]], [[2nre]] – EcRNA + tRNA pseudouridine synthase <br />
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**[[4aq7]], [[4cqn]] – EcRNA + Leu-tRNA synthetase + Leu-AMP<br />
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**[[4arc]] – EcRNA + Leu-tRNA synthetase + Leu<br />
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**[[4ari]], [[4as1]], [[3zjt]], [[3zju]], [[3zjv]] – EcRNA + Leu-tRNA synthetase + benzoxarborole<br />
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**[[3zgz]] – EcRNA + Leu-tRNA synthetase + agrocin<br />
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**[[2zzm]] – MjRNA + ATRM5 <br />
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**[[3j5y]], [[3j5s]] – hRNA + ERF1 + ERF3A + mRNA <br />
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**[[5ah5]] – RNA + Leu-tRNA synthetase + Leu-AMS – Agrobacterium radiobacter<br />
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*Lys-tRNA
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**[[1fir]] – bRNA primer - bovine<br />
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**[[1krs]], [[1krt]] – EcRNA - NMR<br />
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**[[5ccx]] – hRNA + tRNA methyltransferase <br />
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**[[5ccb]], [[5cd1]] – hRNA + tRNA methyltransferase + SAH<br />
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*PyroLys-tRNA
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**[[2zni]] – RNA + PyrLys-tRNA synthetase – Desulfitobacterium hafniense<br />
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*Met-tRNA
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**[[2csx]] – AaRNA + Met-tRNA synthetase <br />
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*Phe-tRNA
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**[[1ehz]], [[4tna]], [[6tna]], [[1tra]], [[1tn2]], [[1tn1]], [[1fcw]] – yRNA <br />
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**[[1eiy]], [[2iy5]], [[3tup]] – TtRNA + Phe-tRNA synthetase <br />
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**[[2iy5]] – TtRNA + Phe-tRNA synthetase + Phe-AMP<br />
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**[[3tup]] – hRNA + Phe-tRNA synthetase <br />
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**[[3foz]], [[2zm5]] – EcRNA + tRNA isopentenyltransferase<br />
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**[[2zxu]] – EcRNA + tRNA isopentenyltransferase + DMASPP<br />
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**[[4yco]] – EcRNA + tRNA dihydrouridine synthetase <br />
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**[[3q1q]], [[3q1r]] – TmRNA + RNase <br />
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**[[3izy]] – bRNA + IF-2<br />
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*Pro-tRNA
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**[[1h4s]] – TtRNA + Pro-tRNA synthetase + ATP <br />
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**[[1h4q]] – TtRNA + Pro-tRNA synthetase + ATP + prolinol<br />
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*Ser-tRNA
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**[[1ser]] – TtRNA + Ser-tRNA synthetase <br />
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*Thr-tRNA
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**[[1qf6]] – EcRNA + Thr-tRNA synthetase <br />
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**[[2fk6]], [[4gcw]] – BsRNA + RNase <br />
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**[[4yye]] – yRNA + Thr-tRNA synthetase + Thr-AMP<br />
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*Trp-tRNA
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**[[2ake]] – bRNA + Trp-tRNA synthetase <br />
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**[[2dr2]] – hRNA + Trp-tRNA synthetase <br />
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**[[4ycp]] – EcRNA + tRNA dihydrouridine synthetase <br />
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*Tyr-tRNA
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**[[1h3e]] – TtRNA + Tyr-tRNA synthetase + ATP + tyrosinol<br />
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**[[1j1u]] – MjRNA + Tyr-tRNA synthetase + tyrosine <br />
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**[[2dlc]] – yRNA + Tyr-tRNA synthetase + Tyr-AMP<br />
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*Val-tRNA
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**[[1gax]], [[1ivs]] – TtRNA + Val-tRNA synthetase + Val-AMP<br />
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**[[1j2b]] – PhRNA + tRNA guanine transglycosylate <br />
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*Initiator tRNA (Formyl-methionine-tRNA)
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**[[3cw5]], [[3cw6]] – EcRNA <br />
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**[[1yfg]] – yRNA <br />
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**[[2fmt]] – yRNA + methionyl-tRNAfMet formyltransferase<br />
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**[[1qvf]] – RNA – Haloarcula marismortui<br />
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**[[3qsy]] – SsRNA + IF-2 – Sulfolobus solfataricus<br />
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**[[3v11]] – SsRNA + IF-2 + GDPNP<br />
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*tRNA
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**[[2dr7]], [[2dr9]], [[2drb]], [[2zh3]], [[2zh4]], [[2zh5]], [[2zh7]], [[2zh8]], [[2zh9]], [[2zhb]], [[3ouy]], [[3ov7]], [[3ova]], [[3ovb]], [[3ovs]] – RNA 33-mer + CCA adding enzyme <br />
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**[[2dr8]], [[2dra]], [[2zh1]], [[2zh2]], [[2zh6]], [[2zha]] – RNA 33-mer + CCA adding enzyme + nucleotide<br />
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**[[3eph]], [[3epj]], [[3epk]], [[3epl]] – RNA + ytRNA isopentenyltransferase<br />
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**[[3b0v]] – TtRNA + tRNA dihydrouridine synthetase <br />
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**[[4yvi]], [[4yvj]], [[4yvk]] – RNA + tRNA methyltransferase + sinefungin – Haemophilus influenzae<br />
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*tRNA in the ribosome
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**[[4v9c]], [[486d]], [[1mj1]], [[1ml5]], [[1pn7]], [[1pn8]], [[1zo1]], [[1zo3]], [[3deg]], [[3ep2]], [[3eq3]], [[3eq4]], [[3j46]], [[4v49]], [[4v4v]], [[4v4w]], [[4v50]], [[4v5h]], [[4v69]], [[4v6d]], [[4v6e]], [[4v6k]], [[4v6l]], [[4v6n]], [[4v6o]], [[4v6p]], [[4v6q]], [[4v6r]], [[4v6s]], [[4v6v]], [[4v6y]], [[4v6z]], [[4v70]], [[4v71]], [[4v72]], [[4v73]], [[4v74]], [[4v75]], [[4v76]], [[4v77]], [[4v78]], [[4v79]], [[4v7a]], [[4v7c]], [[4v7d]], [[4v9c]], [[3j7z]], [[3j9z]], [[3ja1]], [[4woi]], [[5gad]], [[5gae]], [[5gag]], [[5gah]], [[5gaf]] – EcRNA <br />
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**[[1jgo]], [[1jgp]], [[1jgq]], [[1xnq]], [[1xnr]], [[2om7]], [[3t1h]], [[3t1y]], [[4gkj]], [[4gkk]], [[4jv5]], [[4jya]], [[4v42]], [[4v48]], [[4v4i]], [[4v4j]], [[4v4p]], [[4v4r]], [[4v4s]], [[4v4t]], [[4v4x]], [[4v4y]], [[4v4z]], [[4v51]], [[4v5a]], [[4v5c]], [[4v5d]], [[4v5e]], [[4v5f]], [[4v5g]], [[4v5j]], [[4v5k]], [[4v5l]], [[4v5m]], [[4v5n]], [[4v5p]], [[4v5q]], [[4v5r]], [[4v5s]], [[4v63]], [[4v67]], [[4v68]], [[4v6a]], [[4v6f]], [[4v6g]], [[4v7l]], [[4v7m]], [[4v7p]], [[4v87]], [[4v8b]], [[4v8c]], [[4v8d]], [[4v8e]], [[4v8f]], [[4v8j]], [[4v8n]], [[4v8o]], [[4v8q]], [[4v95]], [[4v97]], [[4v9a]], [[4v9b]], [[4v9h]], [[4v9i]], [[4v9j]], [[4v9n]], [[4v9q]], [[4v9r]], [[4v9s]], [[1vvj]], [[4l47]], [[4l71]], [[4lel]], [[4lfz]], [[4lnt]], [[4lsk]], [[4lt8]], [[4p70]], [[1vy4]], [[1vy5]], [[1vy6]], [[1vy7]], [[4p6f]], [[4w29]], [[4w2e]], [[4w2f]], [[4w2g]], [[4w2h]], [[4w2i]], [[4wt8]], [[4wpo]], [[4wqf]], [[4wqu]], [[4wqy]], [[4y4p]], [[4tua]], [[4tub]], [[4tuc]], [[4tud]], [[4tue]], [[4z8c]], [[4zer]], [[4z3s]], [[4wq1]], [[4wqr]], [[4wr6]], [[4wra]], [[4wro]], [[4wsd]], [[4wsm]], [[4wt1]], [[4wu1]], [[4wzd]], [[4wzo]], [[5aa0]], [[5d8b]], [[4w4g]], [[4ypb]], [[4yzv]], [[5doy]], [[5e7k]], [[5e81]], [[5el4]], [[5el5]] – TtRNA <br />
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**[[1njm]], [[1njp]] – RNA – Deinococcus radiodurans<br />
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**[[1qvf]] – RNA – Haloarcula marismortui<br />
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**[[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]], [[4uje]], [[4ujc]], [[4ujd]], [[3j92]], [[3jaj]], [[3jan]], [[3jag]], [[3jah]], [[3jai]] – RNA – rabbit<br />
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**[[3j16]], [[3j6b]], [[4v6i]], [[4v8y]], [[4v8z]], [[5gak]] – yRNA <br />
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**[[4v4n]] – MjRNA <br />
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**[[4v5z]] – RNA - dog<br />
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**[[4v6u]] – RNA – Pyrococcus furiosus<br />
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**[[4v6w]] – RNA – Drosophila melanogaster<br />
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**[[4v6x]], [[3j7y]], [[3j9m]], [[4ug0]], [[5a8l]] – hRNA <br />
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**[[4v7e]] – RNA - wheat<br />
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**[[4v7h]] – RNA - Thermomyces lanuginosus<br />
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**[[4v8m]] – RNA – Trypanosoma brucei<br />
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**[[3j7a]], [[3jbn]], [[3jbo]], [[3jbp]] – RNA – Plasmodium falciparum<br />
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**[[3j7r]], [[4v19]], [[5aj3]], [[5aj4]] – RNA - pig<br />
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**[[4wj3]] – PaRNA <br />
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**[[3j9w]] – BsRNA <br />
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**[[3jbu]] – RNA - Bolitoglossa<br />
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}}
==See Also==
==See Also==
* [[Translation]]
* [[Translation]]

Revision as of 11:46, 24 February 2016

Yeast Phe-tRNA (PDB code 1ehz)

Drag the structure with the mouse to rotate

3D Structures of tRNA

Updated on 24-February-2016



See Also

References

  1. ↑ Motorin Y, Helm M. tRNA stabilization by modified nucleotides. Biochemistry. 2010 Jun 22;49(24):4934-44. PMID:20459084 doi:10.1021/bi100408z

Reference for the structure

  • Shi H, Moore PB. The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited. RNA. 2000 Aug;6(8):1091-105. PMID:10943889
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