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==Overall Structure==
==Overall Structure==
-Secondary Structure:
-Secondary Structure:
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The <scene name='48/483887/Secondary_structure/2'>secondary structure</scene> is mostly made up of alpha helices, shown in pink. The beta strands are shown in yellow.
+
The <scene name='48/483887/Secondary_structure/2'>secondary structure</scene> is made up of eight alpha helices. There are seven transmembrane alpha helices and a carboxy-terminal helix VII, which is parallel to the membrane bilayer.
 +
Only one disulphide bond the amino terminus with helix VII
 +
 +
 
- Polar vs nonpolar:
- Polar vs nonpolar:
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Polar regions are pink. Nonpolar, or hyrophobic, regions are grey. <scene name='48/483887/Polar__nonpolar/1'>Polar and nonplar</scene>
+
Polar regions are pink. Nonpolar, or hydrophobic, regions are grey. <scene name='48/483887/Polar__nonpolar/1'>Polar and nonplar</scene>
-N to C termini:
-N to C termini:
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==Binding Interactions==
==Binding Interactions==
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The <scene name='48/483887/Binding_site/4'>Binding Site</scene> of P2Y12 is colored in purple, which is the burried site, along with the ligands, which is colored in yellow.
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The <scene name='48/483887/Binding_site/4'>Binding Site</scene> of P2Y12 is colored in purple, which is the buried site, along with the ligands, which is colored in yellow.
==Additional Features==
==Additional Features==

Revision as of 15:36, 3 March 2016


This Sandbox is Reserved from January 19, 2016, through August 31, 2016 for use for Proteopedia Team Projects by the class Chemistry 423 Biochemistry for Chemists taught by Lynmarie K Thompson at University of Massachusetts Amherst, USA. This reservation includes Sandbox Reserved 425 through Sandbox Reserved 439.


P2Y12 Receptor in Complex with Clopidogrel (4ntj)[1]

by [Cora Ricker, Lauren Timmins, Aidan Finnerty, Adam Murphy, Duy Nguyen]

Student Projects for UMass Chemistry 423 Spring 2016

caption for Molecular Playground (PDB entry 4ntj)

Drag the structure with the mouse to rotate
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