5aoo

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'''Unreleased structure'''
 
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The entry 5aoo is ON HOLD until Paper Publication
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==X-ray structure of a human Kobuvirus: Aichi virus A (AiV)==
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<StructureSection load='5aoo' size='340' side='right' caption='[[5aoo]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5aoo]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Aichivirus_a Aichivirus a]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AOO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5AOO FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5aoo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5aoo OCA], [http://pdbe.org/5aoo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5aoo RCSB], [http://www.ebi.ac.uk/pdbsum/5aoo PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Hemihedral twinning is a crystal-growth anomaly in which a specimen is composed of two crystal domains that coincide with each other in three dimensions. However, the orientations of the crystal lattices in the two domains differ in a specific way. In diffraction data collected from hemihedrally twinned crystals, each observed intensity contains contributions from both of the domains. With perfect hemihedral twinning, the two domains have the same volumes and the observed intensities do not contain sufficient information to detwin the data. Here, the use of molecular replacement and of noncrystallographic symmetry (NCS) averaging to detwin a 2.1 A resolution data set for Aichi virus 1 affected by perfect hemihedral twinning is described. The NCS averaging enabled the correction of errors in the detwinning introduced by the differences between the molecular-replacement model and the crystallized structure. The procedure permitted the structure to be determined from a molecular-replacement model that had 16% sequence identity and a 1.6 A r.m.s.d. for C(alpha) atoms in comparison to the crystallized structure. The same approach could be used to solve other data sets affected by perfect hemihedral twinning from crystals with NCS.
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Authors: Sabin, C., Palkova, L., Plevka, P.
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The use of noncrystallographic symmetry averaging to solve structures from data affected by perfect hemihedral twinning.,Sabin C, Plevka P Acta Crystallogr F Struct Biol Commun. 2016 Mar 1;72(Pt 3):188-97. doi:, 10.1107/S2053230X16000923. Epub 2016 Feb 16. PMID:26919522<ref>PMID:26919522</ref>
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Description: X-ray structure of a human Kobuvirus: Aichi virus A (AiV)
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Sabin, C]]
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<div class="pdbe-citations 5aoo" style="background-color:#fffaf0;"></div>
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[[Category: Plevka, P]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Aichivirus a]]
[[Category: Palkova, L]]
[[Category: Palkova, L]]
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[[Category: Plevka, P]]
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[[Category: Sabin, C]]
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[[Category: Acute gastroenterisis]]
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[[Category: Aichi virus]]
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[[Category: Full virus particle]]
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[[Category: Icosahedral capsid]]
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[[Category: Kobuvirus]]
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[[Category: Picornavirus]]
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[[Category: Virus]]

Revision as of 03:41, 10 March 2016

X-ray structure of a human Kobuvirus: Aichi virus A (AiV)

5aoo, resolution 2.10Å

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