Sandbox Reserved 1160
From Proteopedia
(Difference between revisions)
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== Discovery == | == Discovery == | ||
| - | The mGlu family of receptors was the first of the Class C GPCR to be extensively studied<ref name="Wu" />. The first regions of the protein crystallized and studied were the Venus fly trap domain and the cystiene-rich domain on the extracellular region of the receptor. The hydrophobic nature and flexibility of the transmembrane domain made it difficult to | + | The mGlu family of receptors was the first of the Class C GPCR to be extensively studied<ref name="Wu" />. The first regions of the protein crystallized and studied were the Venus fly trap domain and the cystiene-rich domain on the extracellular region of the receptor. The hydrophobic nature and flexibility of the transmembrane domain made it difficult to crystallize. Recently, the human metabotropic glutamate receptor 5 transmembrane domain was crystallized and a structure elucidated. There were several modifications that had to be made to the TMD for it to successfully crystallize. The protein was thermostabilized and flexible domains were removed. In total residue 2-568 and residues 837-1153 were excised from the structure. Also, a T4 -<scene name='72/721531/Protien_lys/1'>Lysozyme</scene> was inserted into ICL-2. |
== Structure== | == Structure== | ||
[[Image:STR.png|200 px|left|thumb|Overall Structure of the TMD. The polar heads on the oliec acids orient the protein with the top of the image being the extracellular portion of the protein,the middle portion inserted into the membrane, and the lower portion located inside of the cell. ]] | [[Image:STR.png|200 px|left|thumb|Overall Structure of the TMD. The polar heads on the oliec acids orient the protein with the top of the image being the extracellular portion of the protein,the middle portion inserted into the membrane, and the lower portion located inside of the cell. ]] | ||
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=== Extracellular Domain === | === Extracellular Domain === | ||
=== Binding Pocket === | === Binding Pocket === | ||
| - | The binding pocket represents an interesting source of regulatory control of receptor activity. The binding pocket is only | + | The binding pocket represents an interesting source of regulatory control of receptor activity. The binding pocket is only accessible by a relatively narrow, 7 <scene name='72/721531/Protien_sur/2'>entrance</scene> |
Important Amino Acids: | Important Amino Acids: | ||
| - | *Asparagine 747forms a hydrogen bond network with main chain carbonyl of Glycine 652 and the carbamate portion of mavoglurant. | + | *<scene name='72/721531/Protien_bindtop/2'>Asparagine</scene> 747forms a hydrogen bond network with main chain carbonyl of Glycine 652 and the carbamate portion of mavoglurant. |
*Bicyclic ring surrounded by <scene name='72/721531/Protien_hydrophobic/1'>hydrophobic binding pocket</scene>. | *Bicyclic ring surrounded by <scene name='72/721531/Protien_hydrophobic/1'>hydrophobic binding pocket</scene>. | ||
*2 Catalytic <scene name='72/721531/Protien_bindmiddle/1'>serine</scene> resides H-bond to the hyrdoxyl oxygen of our ligand. | *2 Catalytic <scene name='72/721531/Protien_bindmiddle/1'>serine</scene> resides H-bond to the hyrdoxyl oxygen of our ligand. | ||
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=== Ionic Locks === | === Ionic Locks === | ||
| - | Another important structural feature of the protein is the <scene name='72/721531/Ionic_lock/2'>ionic locks</scene>. | + | Another important structural feature of the protein is the series of <scene name='72/721531/Ionic_lock/2'>ionic locks</scene> on the intracellular side of the protein. |
== Function and Pathway == | == Function and Pathway == | ||
Revision as of 22:31, 29 March 2016
Human metabotropic glutamate receptor 5 transmembrane domain
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References
- ↑ 1.0 1.1 Dore AS, Okrasa K, Patel JC, Serrano-Vega M, Bennett K, Cooke RM, Errey JC, Jazayeri A, Khan S, Tehan B, Weir M, Wiggin GR, Marshall FH. Structure of class C GPCR metabotropic glutamate receptor 5 transmembrane domain. Nature. 2014 Jul 31;511(7511):557-62. doi: 10.1038/nature13396. Epub 2014 Jul 6. PMID:25042998 doi:http://dx.doi.org/10.1038/nature13396
- ↑ 2.0 2.1 2.2 2.3 Wu H, Wang C, Gregory KJ, Han GW, Cho HP, Xia Y, Niswender CM, Katritch V, Meiler J, Cherezov V, Conn PJ, Stevens RC. Structure of a class C GPCR metabotropic glutamate receptor 1 bound to an allosteric modulator. Science. 2014 Apr 4;344(6179):58-64. doi: 10.1126/science.1249489. Epub 2014 Mar , 6. PMID:24603153 doi:http://dx.doi.org/10.1126/science.1249489
