Sandbox HEC

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== Structure and Mechanism ==
== Structure and Mechanism ==
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Human erythrocyte catalase is a negatively charged heme-containing monofunctional tetrameric enzyme prevalent among aerobic organisms (Kodydková, Vávrová, Kocík, & Zák, A., 2014; Alfonso-Prietro, Vidossich, & Rovira, 2012; Dash & Phillips, 2012; Diaz, Loewen, Fita, & Carpena, 2012; Nishikawa, Hashida, & Takakura, 2009). Stable forms of hydrogen peroxide are beneficial in biological reactions including hypoxia signal transduction, cell proliferation and differentiation regulation, and immune response mediation; however, it is toxic at high levels as free hydroxyl ions cannot be catalyzed by the body (Lennicke et al., 2015; Halliwell, Clement, & Long, 2000). Within this catalytic group, hydrogen peroxide acts to both oxidize and reduce the reaction. Catalase ultimately functions to break down hydrogen peroxide (Dash & Phillips, 2012). This is accomplished in a two-step mechanism where the heme is first oxidized by a molecule of hydrogen peroxide to produce Compound I, a high energy oxyferryl cation radical intermediate, as well as a water molecule. Compound I is then immediately reduced by a second hydrogen peroxide molecule to produce a second molecule of water (Alfonso-Prietro, Vidossich, & Rovira, 2012; Diaz, Loewen, Fita, & Carpena, 2012). The overall reaction results in two single-electron removal transfers from the iron atom of the heme group and the porphyrin from the oxoferryl radical, and a proton transfer from histidine. The mechanism is enthalpically driven by the distal histidine proton transfer as it is more exothermic than the electron transfers (Alfonso-Prietro, Vidossich, & Rovira, 2012; Diaz, Loewen, Fita, & Carpena, 2012).
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The catalase fold, a stereoscopic alignment of the clade 3 subunits, contains an eight-sheeted anti-parallel beta-barrel domain linked to a six alpha-helical domain via a lengthy protein sequence. Residues within β1-β4 contribute to the heme variant, while monomers within β5-β8 establish the NADPH binding site (Diaz, Loewen, Fita, & Carpena, 2012). The positioning of the heme is determined by the proximal aromatic pyrrole compounds; in human erythrocyte catalase, catalytic His75 is positioned above pyrrole ring III, further producing a His-III orientation and heme-b variant. The NADPH binding site is located at the β,α-domain junction (Alfonso-Prietro, Vidossich, & Rovira, 2012; Diaz, Loewen, Fita, & Carpena, 2012). When the NADPH molecule is bound, a right-handed clockwise helical formation is produced. In human erythrocyte catalase, only two of the four subunits allow for NADPH binding (Kodydková, Vávrová, Kocík, & Zák, A., 2014; Diaz, Loewen, Fita, & Carpena, 2012). The active site contains a negatively charged tyrosine and a positively charged histidine situated, respectively, proximal and distal to the heme group. The histidine is responsible for the formation of Compound I during the first step of the catalase mechanism (Alfonso-Prietro, Vidossich, & Rovira, 2012).
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The deeply buried heme group is connected to the protein surface by a primary channel which provides a transport pathway for the hydrogen peroxide substrate (Diaz, Loewen, Fita, & Carpena, 2012). The transportation of hydrogen peroxide through the main channel is regulated by electrical dipole interactions between the hydrogen peroxide and the hydrophobic portion of the channel containing negatively charged aspartate and positively charged iron from the heme (Lennicke et al., 2015; Diaz, Loewen, Fita, & Carpena, 2012; Halliwell, Clement, & Long, 2000). Additionally, less significant lateral channels allow products to leave the heme pocket (Diaz, Loewen, Fita, & Carpena, 2012). Human erythrocyte catalase is not evenly distributed throughout the body due to restricted endothelium passageways; this allows for a controlled and localized dissemination of the protein (Nishikawa, Hashida, & Takakura, 2009).
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== Disease and Disorders ==
== Disease and Disorders ==

Revision as of 22:08, 7 April 2016

Human Erythrocyte Catalase

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References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
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