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Important Amino Acids<ref name="Dore" />:
Important Amino Acids<ref name="Dore" />:
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*<scene name='72/721531/Protien_bindtop/4'>Asparagine</scene> 747 forms a hydrogen bond network with the main chain carbonyl of Glycine 652 and the carbamate portion of mavoglurant.
+
*<scene name='72/721531/Protien_bindtop/6'>Asparagine</scene> 747 forms a hydrogen bond network with the main chain carbonyl of Glycine 652 and the carbamate portion of mavoglurant.
*Bicyclic ring of mavoglurant surrounded by <scene name='72/721531/Protien_hydrophobic/1'>hydrophobic binding pocket</scene>.
*Bicyclic ring of mavoglurant surrounded by <scene name='72/721531/Protien_hydrophobic/1'>hydrophobic binding pocket</scene>.
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*2 Catalytic <scene name='72/721531/Protien_bindmiddle/2'>serine</scene> residues H-bond to the hydroxyl oxygen of our ligand.
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*2 Catalytic <scene name='72/721531/Protien_bindmiddle/4'>serine</scene> residues H-bond to the hydroxyl oxygen of our ligand.
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*A <scene name='72/721531/Protien_bindbottom/1'>water molecule</scene> inside of the binding pocket helps stabilize the inactive state.
+
*A <scene name='72/721531/Protien_bindbottom/2'>water molecule</scene> inside of the binding pocket helps stabilize the inactive state.
Once bound to mavoglurant, transmembrane helix 7 undergoes a conformational change<ref name="Dore" />. The shifting of TM7 will lead to a more global conformational change, which inactivates the receptor<ref name="Dore" />. Variation can be seen in positioning of alpha helices across receptor class. Class C receptors have seemingly less space for mavoglurant to enter as compared to Class A and F receptors<ref name="Wu" />. The position of the ligand binding site is also varied between different classes of mGlu receptors<ref name="Dore" />.
Once bound to mavoglurant, transmembrane helix 7 undergoes a conformational change<ref name="Dore" />. The shifting of TM7 will lead to a more global conformational change, which inactivates the receptor<ref name="Dore" />. Variation can be seen in positioning of alpha helices across receptor class. Class C receptors have seemingly less space for mavoglurant to enter as compared to Class A and F receptors<ref name="Wu" />. The position of the ligand binding site is also varied between different classes of mGlu receptors<ref name="Dore" />.

Revision as of 22:02, 18 April 2016

Human metabotropic glutamate receptor 5 transmembrane domain

Human metabotropic glutamate receptor 5 transmembrane domain bound to mavoglurant (PDB code of 4oo9). The 7 helices comprise the bulk of the protein structure. mGlu5 receptor is an important part of the glutamate signaling pathway

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