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The mGlu5 TMD contains 7 <scene name='72/721531/Protien_7_helices/4'> alpha helices</scene> that spans the membrane. The protein was crystallized with <scene name='72/721531/Protien_clean_sce/6'>Oleic acid</scene> shown in <font color='red'>'''red'''</font>. On the top portion of the protein several critical extracellular loops connect the TMD to the CRD. The binding pocket can be found near the middle of the protein, and is mainly comprised of hydrophobic amino acids with more polar amino acids found in the upper and lower portions of the binding site<ref name="Dore" />. Inserted into the biding pocket is the negative allosteric modulator [http://www.en.wikipedia.org/wiki/Mavoglurant mavoglurant]. The TMD is in an inactive conformation, since mavoglurant is bound<ref name="Dore" />. Also, the deletion of the flexible domains leaves the mGlu5 receptor unable to bind to its [[GPCR]]<ref name="Dore" />. The inactive state is maintained by multiple ionic locks whose positions determine the active versus inactive conformation. | The mGlu5 TMD contains 7 <scene name='72/721531/Protien_7_helices/4'> alpha helices</scene> that spans the membrane. The protein was crystallized with <scene name='72/721531/Protien_clean_sce/6'>Oleic acid</scene> shown in <font color='red'>'''red'''</font>. On the top portion of the protein several critical extracellular loops connect the TMD to the CRD. The binding pocket can be found near the middle of the protein, and is mainly comprised of hydrophobic amino acids with more polar amino acids found in the upper and lower portions of the binding site<ref name="Dore" />. Inserted into the biding pocket is the negative allosteric modulator [http://www.en.wikipedia.org/wiki/Mavoglurant mavoglurant]. The TMD is in an inactive conformation, since mavoglurant is bound<ref name="Dore" />. Also, the deletion of the flexible domains leaves the mGlu5 receptor unable to bind to its [[GPCR]]<ref name="Dore" />. The inactive state is maintained by multiple ionic locks whose positions determine the active versus inactive conformation. | ||
| - | When mGlu5 is in the active conformation, signaling begins with glutamate binding to the Venus flytrap domain. The signal is transduced across the cystine-rich domain to the TMD<ref name="Niswender" />. Next, the dimerization of the TMD occurs. This activates the Gq/11 pathway, which activates phospholipase Cβ<ref name="Niswender" />. The active [http://www.proteopedia.org/wiki/index.php/2zkm phospholipase Cβ] hydrolyzes phosphotinositides and generates [https://pubchem.ncbi.nlm.nih.gov/compound/439456#section=Top inositol 1,4,5-trisphosphate] and [http://www.sivabio.50webs.com/ip3.htm diacyl-glycerol]<ref name="Woodcock" />. This results in calcium mobilization and activation of protein kinase C (PKC)<ref name="Niswender" />. Calcium is a neurotransmitter, and relatively low concentrations of calcium can cause a large response across the neuronal synapse<ref name="Niswender" />. In addition to calcium stimulating an exitory response in nerve cells, PKC can be activated for regulatory purposes with the influx of calcium. A serine on PKC can become phosphorylated which leaves it unable to bind to G beta-gamma (Gßγ) protein complex<ref name="Niswender" />. Unbound Gßγ protein can then inhibit voltage-sensitive calcium channels to reduce calcium influx and provide feedback inhibition to the glutamate signaling pathway. <ref name="Niswender" />. | + | When mGlu5 is in the active conformation, signaling begins with glutamate binding to the Venus flytrap domain. The signal is transduced across the cystine-rich domain to the TMD<ref name="Niswender" />. Next, the dimerization of the TMD occurs. This activates the Gq/11 pathway, which activates phospholipase Cβ<ref name="Niswender" />. The active [http://www.proteopedia.org/wiki/index.php/2zkm phospholipase Cβ] hydrolyzes phosphotinositides and generates [https://pubchem.ncbi.nlm.nih.gov/compound/439456#section=Top inositol 1,4,5-trisphosphate] and [http://www.sivabio.50webs.com/ip3.htm diacyl-glycerol]<ref name="Woodcock" />. This results in calcium mobilization and activation of protein kinase C ([[PKC]])<ref name="Niswender" />. Calcium is a neurotransmitter, and relatively low concentrations of calcium can cause a large response across the neuronal synapse<ref name="Niswender" />. In addition to calcium stimulating an exitory response in nerve cells, PKC can be activated for regulatory purposes with the influx of calcium. A serine on PKC can become phosphorylated which leaves it unable to bind to [[G beta-gamma]] (Gßγ) protein complex<ref name="Niswender" />. Unbound Gßγ protein can then inhibit voltage-sensitive calcium channels to reduce calcium influx and provide feedback inhibition to the glutamate signaling pathway. <ref name="Niswender" />. |
=== Extracellular Domain === | === Extracellular Domain === | ||
| - | The extracellular domain of mGlu5 contains several key extracellular loops that will help modulate ligand binding. <scene name='72/721532/Ecl_trail_7/2'>Extracellular Loops</scene> are shown here with extracellular loops (ECLs) <font color='purple'><b>1</b></font>, <font color='purple'><b>2</b></font>, and <font color='purple'><b>3</b></font> highlighted in <font color='purple'><b>purple</b></font>. Additionally in the ECL domain, a <scene name='72/721531/Ecl_trail_1/5'>disulfide bond</scene> is attached to both Helix 3 and the amino acid chain between Helix 5 and the N-terminus. <font color='teal'><b>Helix 3</b></font> and <font color='red'><b>Helix 5</b></font> are colored in <font color='teal'><b>teal</b></font> and <font color='red'><b>red</b></font> respectively. <font color='blue'><b>N-terminus</b></font> is represented in <font color='blue'><b>blue</b></font>. The <span style="color:yellow;background-color:black;font-weight:bold;">disulfide bond</span> is highlighted in <span style="color:yellow;background-color:black;font-weight:bold;">yellow</span>, and it is conserved in all classes of mGlu5 TMD<ref name="Wu" />. The disulfide bond is critical in maintaining the position of ECL 2 <ref name="Dore" />. ECLs and the helices are also factors that dictate how | + | The extracellular domain of mGlu5 contains several key extracellular loops that will help modulate ligand binding. <scene name='72/721532/Ecl_trail_7/2'>Extracellular Loops</scene> are shown here with extracellular loops (ECLs) <font color='purple'><b>1</b></font>, <font color='purple'><b>2</b></font>, and <font color='purple'><b>3</b></font> highlighted in <font color='purple'><b>purple</b></font>. Additionally in the ECL domain, a <scene name='72/721531/Ecl_trail_1/5'>disulfide bond</scene> is attached to both Helix 3 and the amino acid chain between Helix 5 and the N-terminus. <font color='teal'><b>Helix 3</b></font> and <font color='red'><b>Helix 5</b></font> are colored in <font color='teal'><b>teal</b></font> and <font color='red'><b>red</b></font> respectively. <font color='blue'><b>N-terminus</b></font> is represented in <font color='blue'><b>blue</b></font>. The <span style="color:yellow;background-color:black;font-weight:bold;">disulfide bond</span> is highlighted in <span style="color:yellow;background-color:black;font-weight:bold;">yellow</span>, and it is conserved in all classes of mGlu5 TMD<ref name="Wu" />. The disulfide bond is critical in maintaining the position of ECL 2 <ref name="Dore" />. ECLs and the helices are also factors that dictate how mavolgurant fits in the binding pocket <ref name="Dore" />. The position of these ECLs can change the effective size of the binding pocket through loop positioning<ref name="Dore" />. |
=== Binding Pocket === | === Binding Pocket === | ||
| - | [[Image: Organic with clipped surface.png|200 px|left|thumb|'''Figure 2.''' | + | [[Image: Organic with clipped surface.png|200 px|left|thumb|'''Figure 2.''' Mavoglurant in its binding pocket of the 7TM region of mGLu5 Class C receptor. The binding pocket's surface is clipped in black with the substrate, mavoglurant, in red. The rest of the protein is colored in green. The binding pocket is present in the 7 Helix Transmembrane Domain that would be present in the phosolipid bilayer appearing as an intergral protein. The presence of mavoglurant inhibits the function of the metabotropic glutamate receptor.]] |
The binding pocket, not to be confused with the glutamate binding site, represents an useful source of regulatory control. The binding pocket is only accessible by a relatively narrow (7 Å) <scene name='72/721531/Bindingsite/1'>entrance</scene><ref name="Dore" />. This small entrance severely restricts the access of both positive and negative allosteric regulators. One such regulator, <scene name='72/721531/Mavo/2'>mavoglurant</scene>, is a relatively small molecule that can travel through the entrance and fit between the helices of the mGlu5 receptor<ref name="Dore" />. Mavoglurant acts as a negative allosteric modulator of the mGlu5 receptor<ref name="Dore" />. Mavoglurant is a relatively hydrophobic molecule, which compliments the largely hydrophobic nature of the interior of mGlu5<ref name="Dore" />. The carbamate tail and hydroxyl group of mavoglurant will also interact with several key amino acids in the binding site of mGlu5<ref name="Dore" />. | The binding pocket, not to be confused with the glutamate binding site, represents an useful source of regulatory control. The binding pocket is only accessible by a relatively narrow (7 Å) <scene name='72/721531/Bindingsite/1'>entrance</scene><ref name="Dore" />. This small entrance severely restricts the access of both positive and negative allosteric regulators. One such regulator, <scene name='72/721531/Mavo/2'>mavoglurant</scene>, is a relatively small molecule that can travel through the entrance and fit between the helices of the mGlu5 receptor<ref name="Dore" />. Mavoglurant acts as a negative allosteric modulator of the mGlu5 receptor<ref name="Dore" />. Mavoglurant is a relatively hydrophobic molecule, which compliments the largely hydrophobic nature of the interior of mGlu5<ref name="Dore" />. The carbamate tail and hydroxyl group of mavoglurant will also interact with several key amino acids in the binding site of mGlu5<ref name="Dore" />. | ||
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== Disease == | == Disease == | ||
=== Fragile X === | === Fragile X === | ||
| - | Fragile X syndrome is the most common genetic cause of mental disability, and is a member of the Autism spectrum disorder family<ref name="Bailey" />. The severity of intellectual disability can vary from patient to patient, but symptoms commonly stem from a misregulation of the mGlu1 and MGlu5 pathways<ref name="Bailey" />. Misregulation of these pathways leads to over potentiation in neural cells. Mavoglurant and other allosteric regulators like [http://www.en.wikipedia.org/wiki/Fenobam fenobam] have shown promise in treating Fragile X. One positive characteristic of ligands that target the TMD of mGlu5 is they tend to be more specific, thus interacting less with nonspecific brain proteins<ref name="Feng" />. Mavoglurant down regulates glutamate signaling in an attempt to decrease potentiation. Unfortunately, recent Phase 2 clinical trials have proven mavoglurant ineffective <ref name="Bailey" />. However, modulators of mGlu5 TMD are still being investigated as treatment for to Parkinson's, Alzheimer's disease, and various addictions<ref name="Niswender" />. | + | Fragile X syndrome is the most common genetic cause of mental disability, and is a member of the [http://www.nimh.nih.gov/health/topics/autism-spectrum-disorders-asd/index.shtml Autism spectrum disorder] family<ref name="Bailey" />. The severity of intellectual disability can vary from patient to patient, but symptoms commonly stem from a misregulation of the mGlu1 and MGlu5 pathways<ref name="Bailey" />. Misregulation of these pathways leads to over potentiation in neural cells. Mavoglurant and other allosteric regulators like [http://www.en.wikipedia.org/wiki/Fenobam fenobam] have shown promise in treating Fragile X. One positive characteristic of ligands that target the TMD of mGlu5 is they tend to be more specific, thus interacting less with nonspecific brain proteins<ref name="Feng" />. Mavoglurant down regulates glutamate signaling in an attempt to decrease potentiation. Unfortunately, recent Phase 2 clinical trials have proven mavoglurant ineffective <ref name="Bailey" />. However, modulators of mGlu5 TMD are still being investigated as treatment for to Parkinson's, Alzheimer's disease, and various addictions<ref name="Niswender" />. |
Revision as of 10:20, 19 April 2016
Human metabotropic glutamate receptor 5 transmembrane domain
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