Sandbox Reserved 1160
From Proteopedia
(Difference between revisions)
| Line 14: | Line 14: | ||
The mGlu5 TMD contains 7 <scene name='72/721531/Protien_7_helices/4'> alpha helices</scene> that spans the membrane. The protein was crystallized with <scene name='72/721531/Protien_clean_sce/6'>Oleic acid</scene> shown in <font color='red'>'''red'''</font>. On the top portion of the protein several critical extracellular loops connect the TMD to the CRD. The binding pocket can be found near the middle of the protein, and is mainly comprised of hydrophobic amino acids with more polar amino acids found in the upper and lower portions of the binding site<ref name="Dore" />. Inserted into the biding pocket is the negative allosteric modulator [http://www.en.wikipedia.org/wiki/Mavoglurant mavoglurant]. The TMD is in an inactive conformation, since mavoglurant is bound<ref name="Dore" />. Also, the deletion of the flexible domains leaves the mGlu5 receptor unable to bind to its [[GPCR]]<ref name="Dore" />. The inactive state is maintained by multiple ionic locks whose positions determine the active versus inactive conformation. | The mGlu5 TMD contains 7 <scene name='72/721531/Protien_7_helices/4'> alpha helices</scene> that spans the membrane. The protein was crystallized with <scene name='72/721531/Protien_clean_sce/6'>Oleic acid</scene> shown in <font color='red'>'''red'''</font>. On the top portion of the protein several critical extracellular loops connect the TMD to the CRD. The binding pocket can be found near the middle of the protein, and is mainly comprised of hydrophobic amino acids with more polar amino acids found in the upper and lower portions of the binding site<ref name="Dore" />. Inserted into the biding pocket is the negative allosteric modulator [http://www.en.wikipedia.org/wiki/Mavoglurant mavoglurant]. The TMD is in an inactive conformation, since mavoglurant is bound<ref name="Dore" />. Also, the deletion of the flexible domains leaves the mGlu5 receptor unable to bind to its [[GPCR]]<ref name="Dore" />. The inactive state is maintained by multiple ionic locks whose positions determine the active versus inactive conformation. | ||
| - | When mGlu5 is in the active conformation, signaling begins with glutamate binding to the Venus flytrap domain. The signal is transduced across the cystine-rich domain to the TMD<ref name="Niswender" />. Next, the dimerization of the TMD occurs. This activates the Gq/11 pathway, which activates phospholipase Cβ<ref name="Niswender" />. The active [http://www.proteopedia.org/wiki/index.php/2zkm phospholipase Cβ] hydrolyzes phosphotinositides and generates [https://pubchem.ncbi.nlm.nih.gov/compound/439456#section=Top inositol 1,4,5-trisphosphate] and [http://www.sivabio.50webs.com/ip3.htm diacyl-glycerol]<ref name="Woodcock" />. This results in calcium mobilization and activation of protein kinase C ([[PKC]])<ref name="Niswender" />. Calcium is a neurotransmitter, and relatively low concentrations of calcium can cause a large response across the neuronal synapse<ref name="Niswender" />. In addition to calcium stimulating an exitory response in nerve cells, PKC can be activated for regulatory purposes with the influx of calcium. A serine on PKC can become phosphorylated which leaves it unable to bind to | + | When mGlu5 is in the active conformation, signaling begins with glutamate binding to the Venus flytrap domain. The signal is transduced across the cystine-rich domain to the TMD<ref name="Niswender" />. Next, the dimerization of the TMD occurs. This activates the Gq/11 pathway, which activates phospholipase Cβ<ref name="Niswender" />. The active [http://www.proteopedia.org/wiki/index.php/2zkm phospholipase Cβ] hydrolyzes phosphotinositides and generates [https://pubchem.ncbi.nlm.nih.gov/compound/439456#section=Top inositol 1,4,5-trisphosphate] and [http://www.sivabio.50webs.com/ip3.htm diacyl-glycerol]<ref name="Woodcock" />. This results in calcium mobilization and activation of protein kinase C ([[PKC]])<ref name="Niswender" />. Calcium is a neurotransmitter, and relatively low concentrations of calcium can cause a large response across the neuronal synapse<ref name="Niswender" />. In addition to calcium stimulating an exitory response in nerve cells, PKC can be activated for regulatory purposes with the influx of calcium. A serine on PKC can become phosphorylated which leaves it unable to bind to G beta-gamma (Gßγ) protein complex<ref name="Niswender" />. Unbound Gßγ protein can then inhibit voltage-sensitive calcium channels to reduce calcium influx and provide feedback inhibition to the glutamate signaling pathway. <ref name="Niswender" />. |
=== Extracellular Domain === | === Extracellular Domain === | ||
The extracellular domain of mGlu5 contains several key extracellular loops that will help modulate ligand binding. <scene name='72/721532/Ecl_trail_7/2'>Extracellular Loops</scene> are shown here with extracellular loops (ECLs) <font color='purple'><b>1</b></font>, <font color='purple'><b>2</b></font>, and <font color='purple'><b>3</b></font> highlighted in <font color='purple'><b>purple</b></font>. Additionally in the ECL domain, a <scene name='72/721531/Ecl_trail_1/5'>disulfide bond</scene> is attached to both Helix 3 and the amino acid chain between Helix 5 and the N-terminus. <font color='teal'><b>Helix 3</b></font> and <font color='red'><b>Helix 5</b></font> are colored in <font color='teal'><b>teal</b></font> and <font color='red'><b>red</b></font> respectively. <font color='blue'><b>N-terminus</b></font> is represented in <font color='blue'><b>blue</b></font>. The <span style="color:yellow;background-color:black;font-weight:bold;">disulfide bond</span> is highlighted in <span style="color:yellow;background-color:black;font-weight:bold;">yellow</span>, and it is conserved in all classes of mGlu5 TMD<ref name="Wu" />. The disulfide bond is critical in maintaining the position of ECL 2 <ref name="Dore" />. ECLs and the helices are also factors that dictate how mavolgurant fits in the binding pocket <ref name="Dore" />. The position of these ECLs can change the effective size of the binding pocket through loop positioning<ref name="Dore" />. | The extracellular domain of mGlu5 contains several key extracellular loops that will help modulate ligand binding. <scene name='72/721532/Ecl_trail_7/2'>Extracellular Loops</scene> are shown here with extracellular loops (ECLs) <font color='purple'><b>1</b></font>, <font color='purple'><b>2</b></font>, and <font color='purple'><b>3</b></font> highlighted in <font color='purple'><b>purple</b></font>. Additionally in the ECL domain, a <scene name='72/721531/Ecl_trail_1/5'>disulfide bond</scene> is attached to both Helix 3 and the amino acid chain between Helix 5 and the N-terminus. <font color='teal'><b>Helix 3</b></font> and <font color='red'><b>Helix 5</b></font> are colored in <font color='teal'><b>teal</b></font> and <font color='red'><b>red</b></font> respectively. <font color='blue'><b>N-terminus</b></font> is represented in <font color='blue'><b>blue</b></font>. The <span style="color:yellow;background-color:black;font-weight:bold;">disulfide bond</span> is highlighted in <span style="color:yellow;background-color:black;font-weight:bold;">yellow</span>, and it is conserved in all classes of mGlu5 TMD<ref name="Wu" />. The disulfide bond is critical in maintaining the position of ECL 2 <ref name="Dore" />. ECLs and the helices are also factors that dictate how mavolgurant fits in the binding pocket <ref name="Dore" />. The position of these ECLs can change the effective size of the binding pocket through loop positioning<ref name="Dore" />. | ||
Revision as of 10:22, 19 April 2016
Human metabotropic glutamate receptor 5 transmembrane domain
| |||||||||||
