5e7s

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'''Unreleased structure'''
 
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The entry 5e7s is ON HOLD until Paper Publication
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==Hexameric structure of a LonA protease domain in active state==
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<StructureSection load='5e7s' size='340' side='right' caption='[[5e7s]], [[Resolution|resolution]] 3.03&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5e7s]] is a 12 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5E7S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5E7S FirstGlance]. <br>
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</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endopeptidase_La Endopeptidase La], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.53 3.4.21.53] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5e7s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5e7s OCA], [http://pdbe.org/5e7s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5e7s RCSB], [http://www.ebi.ac.uk/pdbsum/5e7s PDBsum]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/A0A059VAZ3_9DEIN A0A059VAZ3_9DEIN]] ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.[HAMAP-Rule:MF_01973]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The Lon AAA+ protease (LonA) plays important roles in protein homeostasis and regulation of diverse biological processes. LonA behaves as a homomeric hexamer in the presence of magnesium (Mg(2+)) and performs ATP-dependent proteolysis. However, it is also found that LonA can carry out Mg(2+)-dependent degradation of unfolded protein substrate in an ATP-independent manner. Here we show that in the presence of Mg(2+) LonA forms a non-secluded hexameric barrel with prominent openings, which explains why Mg(2+)-activated LonA can operate as a diffusion-based chambered protease to degrade unstructured protein and peptide substrates efficiently in the absence of ATP. A 1.85 A crystal structure of Mg(2+)-activated protease domain reveals Mg(2+)-dependent remodeling of a substrate-binding loop and a potential metal-binding site near the Ser-Lys catalytic dyad, supported by biophysical binding assays and molecular dynamics simulations. Together, these findings reveal the specific roles of Mg(2+) in the molecular assembly and activation of LonA.
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Authors: Lin, C.-C., Su, S.-C., Chang, C.-I.
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Structural Basis for the Magnesium-Dependent Activation and Hexamerization of the Lon AAA+ Protease.,Su SC, Lin CC, Tai HC, Chang MY, Ho MR, Babu CS, Liao JH, Wu SH, Chang YC, Lim C, Chang CI Structure. 2016 May 3;24(5):676-86. doi: 10.1016/j.str.2016.03.003. Epub 2016 Mar, 31. PMID:27041593<ref>PMID:27041593</ref>
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Description: Hexameric structure of a LonA protease domain in active state
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Chang, C.-I]]
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<div class="pdbe-citations 5e7s" style="background-color:#fffaf0;"></div>
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[[Category: Su, S.-C]]
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== References ==
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[[Category: Lin, C.-C]]
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Endopeptidase La]]
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[[Category: Chang, C I]]
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[[Category: Lin, C C]]
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[[Category: Su, S C]]
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[[Category: Aaa+ domain]]
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[[Category: Hydrolase]]
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[[Category: Lon protease]]
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[[Category: Protease domain]]

Revision as of 18:06, 10 May 2016

Hexameric structure of a LonA protease domain in active state

5e7s, resolution 3.03Å

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