1io4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 4: Line 4:
|PDB= 1io4 |SIZE=350|CAPTION= <scene name='initialview01'>1io4</scene>, resolution 3.00&Aring;
|PDB= 1io4 |SIZE=350|CAPTION= <scene name='initialview01'>1io4</scene>, resolution 3.00&Aring;
|SITE=
|SITE=
-
|LIGAND= <scene name='pdbligand=AU:GOLD ION'>AU</scene>
+
|LIGAND= <scene name='pdbligand=AU:GOLD+ION'>AU</scene>, <scene name='pdbligand=DA:2&#39;-DEOXYADENOSINE-5&#39;-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2&#39;-DEOXYCYTIDINE-5&#39;-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2&#39;-DEOXYGUANOSINE-5&#39;-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5&#39;-MONOPHOSPHATE'>DT</scene>
|ACTIVITY=
|ACTIVITY=
|GENE=
|GENE=
 +
|DOMAIN=
 +
|RELATEDENTRY=[[1cl3|1CL3]], [[2jhb|2JHB]], [[1cmo|1CMO]], [[1co1|1CO1]], [[1e50|1E50]], [[1hjb|1HJB]], [[1hjc|1HJC]]
 +
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1io4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1io4 OCA], [http://www.ebi.ac.uk/pdbsum/1io4 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1io4 RCSB]</span>
}}
}}
Line 25: Line 28:
[[Category: Ogata, K.]]
[[Category: Ogata, K.]]
[[Category: Tahirov, T H.]]
[[Category: Tahirov, T H.]]
-
[[Category: AU]]
 
[[Category: aml]]
[[Category: aml]]
[[Category: aml1]]
[[Category: aml1]]
Line 37: Line 39:
[[Category: transcription factor]]
[[Category: transcription factor]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 11:52:44 2008''
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 21:22:22 2008''

Revision as of 18:22, 30 March 2008

Image:1io4.gif


PDB ID 1io4

Drag the structure with the mouse to rotate
, resolution 3.00Å
Ligands: , , , ,
Related: 1CL3, 2JHB, 1CMO, 1CO1, 1E50, 1HJB, 1HJC


Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml



CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN HETERODIMER AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER


Overview

The core binding factor (CBF) heterodimeric transcription factors comprised of AML/CBFA/PEBP2alpha/Runx and CBFbeta/PEBP2beta subunits are essential for differentiation of hematopoietic and bone cells, and their mutation is intimately related to the development of acute leukemias and cleidocranial dysplasia. Here, we present the crystal structures of the AML1/Runx-1/CBFalpha(Runt domain)-CBFbeta(core domain)-C/EBPbeta(bZip)-DNA, AML1/Runx-1/CBFalpha(Runt domain)-C/EBPbeta(bZip)-DNA, and AML1/Runx-1/CBFalpha(Runt domain)-DNA complexes. The hydrogen bonding network formed among CBFalpha(Runt domain) and CBFbeta, and CBFalpha(Runt domain) and DNA revealed the allosteric regulation mechanism of CBFalpha(Runt domain)-DNA binding by CBFbeta. The point mutations of CBFalpha related to the aforementioned diseases were also mapped and their effect on DNA binding is discussed.

About this Structure

1IO4 is a Protein complex structure of sequences from Homo sapiens and Mus musculus. Full crystallographic information is available from OCA.

Reference

Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta., Tahirov TH, Inoue-Bungo T, Morii H, Fujikawa A, Sasaki M, Kimura K, Shiina M, Sato K, Kumasaka T, Yamamoto M, Ishii S, Ogata K, Cell. 2001 Mar 9;104(5):755-67. PMID:11257229

Page seeded by OCA on Sun Mar 30 21:22:22 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1io4"
Personal tools