1iw8
From Proteopedia
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|PDB= 1iw8 |SIZE=350|CAPTION= <scene name='initialview01'>1iw8</scene>, resolution 2.5Å | |PDB= 1iw8 |SIZE=350|CAPTION= <scene name='initialview01'>1iw8</scene>, resolution 2.5Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=SO4:SULFATE ION'>SO4</scene> | + | |LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Acid_phosphatase Acid phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.2 3.1.3.2] </span> |
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1d2t|1D2T]], [[1eoi|1EOI]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iw8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iw8 OCA], [http://www.ebi.ac.uk/pdbsum/1iw8 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1iw8 RCSB]</span> | ||
}} | }} | ||
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[[Category: Shimba, N.]] | [[Category: Shimba, N.]] | ||
[[Category: Suzuki, E.]] | [[Category: Suzuki, E.]] | ||
| - | [[Category: SO4]] | ||
[[Category: all alpha]] | [[Category: all alpha]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 21:25:28 2008'' |
Revision as of 18:25, 30 March 2008
| |||||||
| , resolution 2.5Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Activity: | Acid phosphatase, with EC number 3.1.3.2 | ||||||
| Related: | 1D2T, 1EOI
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal Structure of a mutant of acid phosphatase from Escherichia blattae (G74D/I153T)
Overview
Escherichia blattae non-specific acid phosphatase (EB-NSAP) possesses a pyrophosphate-nucleoside phosphotransferase activity, which is C-5'-position selective. Current mutational and structural data were used to generate a mutant EB-NSAP for a potential industrial application as an effective and economical protein catalyst in synthesizing nucleotides from nucleosides. First, Gly74 and Ile153 were replaced by Asp and Thr, respectively, since the corresponding replacements in the homologous enzyme from Morganella morganii reduced the K(m) value for inosine and thus increased the productivity of 5'-IMP. We determined the crystal structure of G74D/I153T, which has a reduced K(m) value for inosine, as expected. The tertiary structure of G74D/I153T was virtually identical to that of the wild-type. In addition, neither of the introduced side chains of Asp74 and Thr153 is directly involved in the interaction with inosine in a hypothetical binding mode of inosine to EB-NSAP, although both residues are situated near a potential inosine-binding site. These findings suggested that a slight structural change caused by an amino acid replacement around the potential inosine-binding site could significantly reduce the K(m) value. Prompted by this hypothesis, we designed several mutations and introduced them to G74D/I153T, to decrease the K(m) value further. This strategy produced a S72F/G74D/I153T mutant with a 5.4-fold lower K(m) value and a 2.7-fold higher V(max) value as compared to the wild-type EB-NSAP.
About this Structure
1IW8 is a Single protein structure of sequence from Escherichia blattae. Full crystallographic information is available from OCA.
Reference
Enhancement of nucleoside phosphorylation activity in an acid phosphatase., Ishikawa K, Mihara Y, Shimba N, Ohtsu N, Kawasaki H, Suzuki E, Asano Y, Protein Eng. 2002 Jul;15(7):539-43. PMID:12200535
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