1j5m
From Proteopedia
| Line 4: | Line 4: | ||
|PDB= 1j5m |SIZE=350|CAPTION= <scene name='initialview01'>1j5m</scene> | |PDB= 1j5m |SIZE=350|CAPTION= <scene name='initialview01'>1j5m</scene> | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=CD:CADMIUM ION'>CD</scene> | + | |LIGAND= <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1j5l|1J5L]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j5m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j5m OCA], [http://www.ebi.ac.uk/pdbsum/1j5m PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1j5m RCSB]</span> | ||
}} | }} | ||
| Line 25: | Line 28: | ||
[[Category: Munoz, A.]] | [[Category: Munoz, A.]] | ||
[[Category: Petering, D H.]] | [[Category: Petering, D H.]] | ||
| - | [[Category: CD]] | ||
[[Category: 113cd-nmr]] | [[Category: 113cd-nmr]] | ||
[[Category: 2d-nmr]] | [[Category: 2d-nmr]] | ||
| Line 34: | Line 36: | ||
[[Category: metallothionein]] | [[Category: metallothionein]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 21:29:08 2008'' |
Revision as of 18:29, 30 March 2008
| |||||||
| Ligands: | |||||||
| Related: | 1J5L
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
SOLUTION STRUCTURE OF THE SYNTHETIC 113CD_3 BETA_N DOMAIN OF LOBSTER METALLOTHIONEIN-1
Overview
The three-dimensional structures of the isolated Cd(3)beta domains from Homarus americanus metallothionein have been determined by NMR methods in order to establish a set of beta-domain structures for comparative analysis. First, it was determined that the Cd-cysteine connectivities forming the Cd(3)S(9) metal center were identical to those observed for the beta(N) domain in the native holoprotein. Time- and temperature-dependence studies of the (113)Cd and (1)H 1D-NMR spectra indicated that the beta(N) domain undergoes slow conformational changes before reaching an equilibrium structure. In addition to structural information provided by the metal-to-cysteine connectivities, Phi, chi(1) and chi(2) angle constraints, three H(N...)S hydrogen bond interactions were also determined from a long-range optimized (1)H(N)-(113)Cd HMQC experiment. A simulated annealing protocol was applied to the distance and angle constraints obtained from the 2D-NMR experiments to calculate the three-dimensional structure of the synthetic Cd(3)beta(N) domain of lobster metallothionein. Structure-reactivity relationships are proposed for the reactions of Cd(3)beta domains with 5,5'-dithiobis(2-nitrobenzoate), based on comparisons of surface exposure of sulfur atoms of the lobster and rabbit Cd(3)beta domain structures. Finally, the surface exposure of the beta domains of lobster is compared with beta domains from mammalian metallothioneins.
About this Structure
1J5M is a Single protein structure of sequence from [1]. This structure supersedes the now removed PDB entry 1HZR. Full crystallographic information is available from OCA.
Reference
Structure of the (113)Cd(3)beta domains from Homarus americanus metallothionein-1: hydrogen bonding and solvent accessibility of sulfur atoms., Munoz A, Forsterling FH, Shaw CF 3rd, Petering DH, J Biol Inorg Chem. 2002 Sep;7(7-8):713-24. Epub 2002 Mar 13. PMID:12203008
Page seeded by OCA on Sun Mar 30 21:29:08 2008
