5laa
From Proteopedia
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- | '''Unreleased structure''' | ||
- | + | ==X-RAY STRUCTURE OF THE METHYLTRANSFERASE SUBUNIT A FROM METHANOTHERMUS FERVIDUS IN COMPLEX WITH COBALAMIN== | |
+ | <StructureSection load='5laa' size='340' side='right' caption='[[5laa]], [[Resolution|resolution]] 3.00Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[5laa]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LAA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LAA FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=B12:COBALAMIN'>B12</scene></td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tetrahydromethanopterin_S-methyltransferase Tetrahydromethanopterin S-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.86 2.1.1.86] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5laa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5laa OCA], [http://pdbe.org/5laa PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5laa RCSB], [http://www.ebi.ac.uk/pdbsum/5laa PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5laa ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/E3GWY7_METFV E3GWY7_METFV]] Part of a complex that catalyzes the formation of methyl-coenzyme M and tetrahydromethanopterin from coenzyme M and methyl-tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step.[HAMAP-Rule:MF_01093] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | In the three domains of life, vitamin B12 (cobalamin) is primarily used in methyltransferase and isomerase reactions. The methyltransferase complex MtrA-H of methanogenic archaea has a key function in energy conservation by catalysing the methyl transfer from methyl-tetrahydromethanopterin to coenzyme M and its coupling with sodium-ion translocation. The cobalamin-binding subunit MtrA is not homologous to any known B12-binding proteins and is proposed as the motor of the sodium-ion pump. Here, we present crystal structures of the soluble domain of the membrane-associated MtrA from Methanocaldococcus jannaschii and the cytoplasmic MtrA homologue/cobalamin complex from Methanothermus fervidus. The MtrA fold corresponds to the Rossmann-type alpha/beta fold, which is also found in many cobalamin-containing proteins. Surprisingly, the cobalamin-binding site of MtrA differed greatly from all the other cobalamin-binding sites. Nevertheless, the hydrogen-bond linkage at the lower axial-ligand site of cobalt was equivalently constructed to that found in other methyltransferases and mutases. A distinct polypeptide segment fixed through the hydrogen-bond linkage in the relaxed Co(III) state might be involved in propagating the energy released upon corrinoid demethylation to the sodium-translocation site by a conformational change. | ||
- | + | MtrA of the sodium ion pumping methyltransferase binds cobalamin in a unique mode.,Wagner T, Ermler U, Shima S Sci Rep. 2016 Jun 21;6:28226. doi: 10.1038/srep28226. PMID:27324530<ref>PMID:27324530</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
+ | <div class="pdbe-citations 5laa" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Tetrahydromethanopterin S-methyltransferase]] | ||
+ | [[Category: Ermler, U]] | ||
[[Category: Shima, S]] | [[Category: Shima, S]] | ||
[[Category: Wagner, T]] | [[Category: Wagner, T]] | ||
- | [[Category: | + | [[Category: Cobalamin]] |
+ | [[Category: Coenzymem]] | ||
+ | [[Category: Hyperthermophile]] | ||
+ | [[Category: Marine organism]] | ||
+ | [[Category: Membrane protein]] | ||
+ | [[Category: Methanogenesis]] | ||
+ | [[Category: Methyltransferase]] | ||
+ | [[Category: Motor pump]] | ||
+ | [[Category: Rossmann fold]] | ||
+ | [[Category: Transferase]] | ||
+ | [[Category: Vitamin b12]] |
Revision as of 02:19, 13 July 2016
X-RAY STRUCTURE OF THE METHYLTRANSFERASE SUBUNIT A FROM METHANOTHERMUS FERVIDUS IN COMPLEX WITH COBALAMIN
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