5ffr

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'''Unreleased structure'''
 
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The entry 5ffr is ON HOLD until Paper Publication
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==Crystal Structure of Surfactant Protein-A complexed with phosphocholine==
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<StructureSection load='5ffr' size='340' side='right' caption='[[5ffr]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5ffr]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FFR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FFR FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PC:PHOSPHOCHOLINE'>PC</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SME:METHIONINE+SULFOXIDE'>SME</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ffs|5ffs]], [[5fft|5fft]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ffr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ffr OCA], [http://pdbe.org/5ffr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ffr RCSB], [http://www.ebi.ac.uk/pdbsum/5ffr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ffr ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/SFTPA_RAT SFTPA_RAT]] In presence of calcium ions, it binds to surfactant phospholipids and contributes to lower the surface tension at the air-liquid interface in the alveoli of the mammalian lung and is essential for normal respiration.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Surfactant protein A (SP-A) is a collagenous C-type lectin (collectin) that is critical for pulmonary defense against inhaled microorganisms. Bifunctional avidity of SP-A for pathogen-associated molecular patterns (PAMPs) such as lipid A and for dipalmitoylphosphatidylcholine (DPPC), the major component of surfactant membranes lining the air-liquid interface of the lung, ensures that the protein is poised for first-line interactions with inhaled pathogens. To improve our understanding of the motifs that are required for interactions with microbes and surfactant structures, we explored the role of the tyrosine-rich binding surface on the carbohydrate recognition domain of SP-A in the interaction with DPPC and lipid A using crystallography, site-directed mutagenesis, and molecular dynamics simulations. Critical binding features for DPPC binding include a three-walled tyrosine cage that binds the choline headgroup through cation-pi interactions and a positively charged cluster that binds the phosphoryl group. This basic cluster is also critical for binding of lipid A, a bacterial PAMP and target for SP-A. Molecular dynamics simulations further predict that SP-A binds lipid A more tightly than DPPC. These results suggest that the differential binding properties of SP-A favor transfer of the protein from surfactant DPPC to pathogen membranes containing appropriate lipid PAMPs to effect key host defense functions.
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Authors: Goh, B.C., Wu, H., Rynkiewicz, M.J., Schulten, K., Seaton, B.A., McCormack, F.X.
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Elucidation of Lipid Binding Sites on Lung Surfactant Protein A Using X-ray Crystallography, Mutagenesis, and Molecular Dynamics Simulations.,Goh BC, Wu H, Rynkiewicz MJ, Schulten K, Seaton BA, McCormack FX Biochemistry. 2016 Jul 5;55(26):3692-701. doi: 10.1021/acs.biochem.6b00048. Epub , 2016 Jun 21. PMID:27324153<ref>PMID:27324153</ref>
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Description: Crystal Structure of Surfactant Protein-A complexed with phosphocholine
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Mccormack, F.X]]
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<div class="pdbe-citations 5ffr" style="background-color:#fffaf0;"></div>
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[[Category: Wu, H]]
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== References ==
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[[Category: Rynkiewicz, M.J]]
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<references/>
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[[Category: Seaton, B.A]]
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__TOC__
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[[Category: Goh, B.C]]
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</StructureSection>
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[[Category: Goh, B C]]
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[[Category: McCormack, F X]]
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[[Category: Rynkiewicz, M J]]
[[Category: Schulten, K]]
[[Category: Schulten, K]]
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[[Category: Seaton, B A]]
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[[Category: Wu, H]]
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[[Category: Carbohydrate binding]]
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[[Category: Collectin]]
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[[Category: Lectin]]
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[[Category: Lipid binding]]
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[[Category: Sugar binding protein]]

Revision as of 02:21, 13 July 2016

Crystal Structure of Surfactant Protein-A complexed with phosphocholine

5ffr, resolution 2.20Å

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