1jqx
From Proteopedia
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|PDB= 1jqx |SIZE=350|CAPTION= <scene name='initialview01'>1jqx</scene>, resolution 1.7Å | |PDB= 1jqx |SIZE=350|CAPTION= <scene name='initialview01'>1jqx</scene>, resolution 1.7Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ORO:OROTIC+ACID'>ORO</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Dihydroorotate_oxidase Dihydroorotate oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.3.1 1.3.3.1] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Dihydroorotate_oxidase Dihydroorotate oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.3.1 1.3.3.1] </span> |
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1dor|1DOR]], [[2dor|2DOR]], [[1jqv|1JQV]], [[1jrb|1JRB]], [[1jrc|1JRC]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jqx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jqx OCA], [http://www.ebi.ac.uk/pdbsum/1jqx PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1jqx RCSB]</span> | ||
}} | }} | ||
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[[Category: Norager, S.]] | [[Category: Norager, S.]] | ||
[[Category: Ottosen, M.]] | [[Category: Ottosen, M.]] | ||
| - | [[Category: FMN]] | ||
| - | [[Category: GOL]] | ||
| - | [[Category: MG]] | ||
| - | [[Category: ORO]] | ||
[[Category: alpha-beta barrel]] | [[Category: alpha-beta barrel]] | ||
[[Category: flavoprotein]] | [[Category: flavoprotein]] | ||
| Line 40: | Line 39: | ||
[[Category: orotate complex]] | [[Category: orotate complex]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 21:37:41 2008'' |
Revision as of 18:37, 30 March 2008
| |||||||
| , resolution 1.7Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , , , | ||||||
| Activity: | Dihydroorotate oxidase, with EC number 1.3.3.1 | ||||||
| Related: | 1DOR, 2DOR, 1JQV, 1JRB, 1JRC
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
The R57A mutant of Lactococcus lactis dihydroorotate dehydrogenase A
Overview
Dihydroorotate dehydrogenases (DHODs) are flavoenzymes catalyzing the oxidation of (S)-dihydroorotate to orotate in the biosynthesis of UMP, the precursor of all other pyrimidine nucleotides. On the basis of sequence, DHODs can be divided into two classes, class 1, further divided in subclasses 1A and 1B, and class 2. This division corresponds to differences in cellular location and the nature of the electron acceptor. Herein we report a study of Lactococcus lactis DHODA, a representative of the class 1A enzymes. Based on the DHODA structure we selected seven residues that are highly conserved between both main classes of DHODs as well as three residues representing surface charges close to the active site for site-directed mutagenesis. The availability of both kinetic and structural data on the mutant enzymes allowed us to define the roles individual structural segments play in catalysis. We have also structurally proven the presence of an open active site loop in DHODA and obtained information about the interactions that control movements of loops around the active site. Furthermore, in one mutant structure we observed differences between the two monomers of the dimer, confirming an apparent asymmetry between the two substrate binding sites that was indicated by the kinetic results.
About this Structure
1JQX is a Single protein structure of sequence from Lactococcus lactis. Full crystallographic information is available from OCA.
Reference
Lactococcus lactis dihydroorotate dehydrogenase A mutants reveal important facets of the enzymatic function., Norager S, Arent S, Bjornberg O, Ottosen M, Lo Leggio L, Jensen KF, Larsen S, J Biol Chem. 2003 Aug 1;278(31):28812-22. Epub 2003 May 5. PMID:12732650
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