1jto

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 5: Line 5:
|SITE=
|SITE=
|LIGAND=
|LIGAND=
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17]
+
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span>
|GENE=
|GENE=
 +
|DOMAIN=
 +
|RELATEDENTRY=[[1mel|1MEL]]
 +
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jto OCA], [http://www.ebi.ac.uk/pdbsum/1jto PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1jto RCSB]</span>
}}
}}
Line 36: Line 39:
[[Category: vhh]]
[[Category: vhh]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:08:19 2008''
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 21:38:52 2008''

Revision as of 18:38, 30 March 2008


PDB ID 1jto

Drag the structure with the mouse to rotate
, resolution 2.5Å
Activity: Lysozyme, with EC number 3.2.1.17
Related: 1MEL


Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml



Degenerate interfaces in antigen-antibody complexes


Overview

In most of the work dealing with the analysis of protein-protein interfaces, a single X-ray structure is available or selected, and implicitly it is assumed that this structure corresponds to the optimal complex for this pair of proteins. However, we have found a degenerate interface in a high-affinity antibody-antigen complex: the two independent complexes of the camel variable domain antibody fragment cAb-Lys3 and its antigen hen egg white lysozyme present in the asymmetric unit of our crystals show a difference in relative orientation between antibody and antigen, leading to important differences at the protein-protein interface. A third cAb-Lys3-hen lysozyme complex in a different crystal form adopts yet another relative orientation. Our results show that protein-protein interface characteristics can vary significantly between different specimens of the same high-affinity antibody-protein antigen complex. Consideration should be given to this type of observation when trying to establish general protein-protein interface characteristics.

About this Structure

1JTO is a Protein complex structure of sequences from Camelus dromedarius and Gallus gallus. Full crystallographic information is available from OCA.

Reference

Degenerate interfaces in antigen-antibody complexes., Decanniere K, Transue TR, Desmyter A, Maes D, Muyldermans S, Wyns L, J Mol Biol. 2001 Oct 26;313(3):473-8. PMID:11676532

Page seeded by OCA on Sun Mar 30 21:38:52 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools