1lf7
From Proteopedia
| Line 4: | Line 4: | ||
|PDB= 1lf7 |SIZE=350|CAPTION= <scene name='initialview01'>1lf7</scene>, resolution 1.20Å | |PDB= 1lf7 |SIZE=350|CAPTION= <scene name='initialview01'>1lf7</scene>, resolution 1.20Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=CIT:CITRIC ACID'>CIT</scene> | + | |LIGAND= <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= 9q34.3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens]) | |GENE= 9q34.3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens]) | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1iw2|1IW2]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1lf7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lf7 OCA], [http://www.ebi.ac.uk/pdbsum/1lf7 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1lf7 RCSB]</span> | ||
}} | }} | ||
| Line 29: | Line 32: | ||
[[Category: Schreck, S F.]] | [[Category: Schreck, S F.]] | ||
[[Category: Sodetz, J M.]] | [[Category: Sodetz, J M.]] | ||
| - | [[Category: CIT]] | ||
[[Category: beta barrel]] | [[Category: beta barrel]] | ||
[[Category: calyx]] | [[Category: calyx]] | ||
| Line 36: | Line 38: | ||
[[Category: mac]] | [[Category: mac]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:02:10 2008'' |
Revision as of 19:02, 30 March 2008
| |||||||
| , resolution 1.20Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Gene: | 9q34.3 (Homo sapiens) | ||||||
| Related: | 1IW2
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal Structure of Human Complement Protein C8gamma at 1.2 A Resolution
Overview
C8gamma is a 22-kDa subunit of human C8, which is one of five components of the cytolytic membrane attack complex of complement (MAC). C8gamma is disulfide-linked to a C8alpha subunit that is noncovalently associated with a C8beta chain. In the present study, the three-dimensional structure of recombinant C8gamma was determined by X-ray diffraction to 1.2 A resolution. The structure displays a typical lipocalin fold forming a calyx with a distinct binding pocket that is indicative of a ligand-binding function for C8gamma. When compared to other lipocalins, the overall structure is most similar to neutrophil gelatinase associated lipocalin (NGAL), a protein released from granules of activated neutrophils. Notable differences include a much deeper binding pocket in C8gamma as well as variation in the identity and position of residues lining the pocket. In C8gamma, these residues allow ligand access to a large hydrophobic cavity at the base of the calyx, whereas corresponding residues in NGAL restrict access. This suggests the natural ligands for C8gamma and NGAL are significantly different in size. Cys40 in C8gamma, which forms the disulfide bond to C8alpha, is located in a partially disordered loop (loop 1, residues 38-52) near the opening of the calyx. Access to the calyx may be regulated by movement of this loop in response to conformational changes in C8alpha during MAC formation.
About this Structure
1LF7 is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.
Reference
Crystal structure of human complement protein C8gamma at 1.2 A resolution reveals a lipocalin fold and a distinct ligand binding site., Ortlund E, Parker CL, Schreck SF, Ginell S, Minor W, Sodetz JM, Lebioda L, Biochemistry. 2002 Jun 4;41(22):7030-7. PMID:12033936
Page seeded by OCA on Sun Mar 30 22:02:10 2008
Categories: Homo sapiens | Single protein | Ginell, S. | Lebioda, L. | Minor, W. | Ortlund, E. | Parker, C L. | Schreck, S F. | Sodetz, J M. | Beta barrel | Calyx | Complement | Lipocalin | Mac
