3glx
From Proteopedia
(Difference between revisions)
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==Crystal Structure Analysis of the DtxR(E175K) complexed with Ni(II)== | ==Crystal Structure Analysis of the DtxR(E175K) complexed with Ni(II)== | ||
<StructureSection load='3glx' size='340' side='right' caption='[[3glx]], [[Resolution|resolution]] 1.85Å' scene=''> | <StructureSection load='3glx' size='340' side='right' caption='[[3glx]], [[Resolution|resolution]] 1.85Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[3glx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[3glx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_diphtheriae"_kruse_in_flugge_1886 "bacillus diphtheriae" kruse in flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GLX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GLX FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2qqa|2qqa]], [[2qqb|2qqb]], [[2qq9|2qq9]], [[1ddn|1ddn]], [[1p92|1p92]], [[1xcv|1xcv]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2qqa|2qqa]], [[2qqb|2qqb]], [[2qq9|2qq9]], [[1ddn|1ddn]], [[1p92|1p92]], [[1xcv|1xcv]]</td></tr> | ||
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DIP1414, dtxR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1717 | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DIP1414, dtxR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1717 "Bacillus diphtheriae" Kruse in Flugge 1886])</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3glx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3glx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3glx RCSB], [http://www.ebi.ac.uk/pdbsum/3glx PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3glx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3glx OCA], [http://pdbe.org/3glx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3glx RCSB], [http://www.ebi.ac.uk/pdbsum/3glx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3glx ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
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<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
- | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3glx ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
+ | <div class="pdbe-citations 3glx" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Bacillus diphtheriae kruse in flugge 1886]] |
[[Category: Aquino, J A.D]] | [[Category: Aquino, J A.D]] | ||
[[Category: Aquino, K E.D]] | [[Category: Aquino, K E.D]] |
Revision as of 09:56, 5 August 2016
Crystal Structure Analysis of the DtxR(E175K) complexed with Ni(II)
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Categories: Bacillus diphtheriae kruse in flugge 1886 | Aquino, J A.D | Aquino, K E.D | Denninger, A | Moulin, A | Ringe, D | Activation | Dna-binding | Dtxr | Ferrous iron | Helix-turn-helix | Iron | Metal ion | Regulator | Repressor | Transcription | Transcription regulation | Transcriptional regulation | Transcriptional regulator