1mb4
From Proteopedia
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|PDB= 1mb4 |SIZE=350|CAPTION= <scene name='initialview01'>1mb4</scene>, resolution 1.84Å | |PDB= 1mb4 |SIZE=350|CAPTION= <scene name='initialview01'>1mb4</scene>, resolution 1.84Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=CYS:CYSTEINE'>CYS</scene> | + | |LIGAND= <scene name='pdbligand=CYS:CYSTEINE'>CYS</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Aspartate-semialdehyde_dehydrogenase Aspartate-semialdehyde dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.11 1.2.1.11] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate-semialdehyde_dehydrogenase Aspartate-semialdehyde dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.11 1.2.1.11] </span> |
|GENE= asd ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=666 Vibrio cholerae]) | |GENE= asd ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=666 Vibrio cholerae]) | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1gl3|1GL3]], [[1brm|1brm]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1mb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mb4 OCA], [http://www.ebi.ac.uk/pdbsum/1mb4 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1mb4 RCSB]</span> | ||
}} | }} | ||
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[[Category: Moore, R A.]] | [[Category: Moore, R A.]] | ||
[[Category: Viola, R E.]] | [[Category: Viola, R E.]] | ||
| - | [[Category: CYS]] | ||
| - | [[Category: NDP]] | ||
[[Category: aspartate-semialdehyde dehydrogenase]] | [[Category: aspartate-semialdehyde dehydrogenase]] | ||
[[Category: complex]] | [[Category: complex]] | ||
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[[Category: vibrio cholerae]] | [[Category: vibrio cholerae]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:13:51 2008'' |
Revision as of 19:13, 30 March 2008
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| , resolution 1.84Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , | ||||||
| Gene: | asd (Vibrio cholerae) | ||||||
| Activity: | Aspartate-semialdehyde dehydrogenase, with EC number 1.2.1.11 | ||||||
| Related: | 1GL3, 1brm
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal structure of aspartate semialdehyde dehydrogenase from vibrio cholerae with NADP and S-methyl-l-cysteine sulfoxide
Overview
L-Aspartate-beta-semialdehyde dehydrogenase (ASADH) catalyzes the reductive dephosphorylation of beta-aspartyl phosphate to L-aspartate-beta-semialdehyde in the aspartate biosynthetic pathway of plants and micro-organisms. The aspartate pathway produces fully one-quarter of the naturally occurring amino acids, but is not found in humans or other eukaryotic organisms, making ASADH an attractive target for the development of new antibacterial, fungicidal, or herbicidal compounds. We have determined the structure of ASADH from Vibrio cholerae in two states; the apoenzyme and a complex with NADP, and a covalently bound active site inhibitor, S-methyl-L-cysteine sulfoxide. Upon binding the inhibitor undergoes an enzyme-catalyzed reductive demethylation leading to a covalently bound cysteine that is observed in the complex structure. The enzyme is a functional homodimer, with extensive intersubunit contacts and a symmetrical 4-amino acid bridge linking the active site residues in adjacent subunits that could serve as a communication channel. The active site is essentially preformed, with minimal differences in active site conformation in the apoenzyme relative to the ternary inhibitor complex. The conformational changes that do occur result primarily from NADP binding, and are localized to the repositioning of two surface loops located on the rim at opposite sides of the NADP cleft.
About this Structure
1MB4 is a Single protein structure of sequence from Vibrio cholerae. Full crystallographic information is available from OCA.
Reference
A structural basis for the mechanism of aspartate-beta-semialdehyde dehydrogenase from Vibrio cholerae., Blanco J, Moore RA, Kabaleeswaran V, Viola RE, Protein Sci. 2003 Jan;12(1):27-33. PMID:12493825
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