3f8i
From Proteopedia
(Difference between revisions)
Line 1: | Line 1: | ||
+ | |||
==Mouse UHRF1 SRA domain bound with hemi-methylated CpG, crystal structure in space group P21== | ==Mouse UHRF1 SRA domain bound with hemi-methylated CpG, crystal structure in space group P21== | ||
<StructureSection load='3f8i' size='340' side='right' caption='[[3f8i]], [[Resolution|resolution]] 2.29Å' scene=''> | <StructureSection load='3f8i' size='340' side='right' caption='[[3f8i]], [[Resolution|resolution]] 2.29Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[3f8i]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[3f8i]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F8I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3F8I FirstGlance]. <br> |
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=5CM:5-METHYL-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>5CM</scene></td></tr> | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=5CM:5-METHYL-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>5CM</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2zo0|2zo0]], [[2zo1|2zo1]], [[2zo2|2zo2]], [[3f8j|3f8j]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2zo0|2zo0]], [[2zo1|2zo1]], [[2zo2|2zo2]], [[3f8j|3f8j]]</td></tr> | ||
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Uhrf1, Np95 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Uhrf1, Np95 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3f8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f8i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3f8i RCSB], [http://www.ebi.ac.uk/pdbsum/3f8i PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3f8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f8i OCA], [http://pdbe.org/3f8i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3f8i RCSB], [http://www.ebi.ac.uk/pdbsum/3f8i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3f8i ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
Line 18: | Line 19: | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
- | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3f8i ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
Line 28: | Line 29: | ||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
+ | <div class="pdbe-citations 3f8i" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
Line 35: | Line 37: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Lk3 transgenic mice]] |
[[Category: Cheng, X]] | [[Category: Cheng, X]] | ||
[[Category: Hashimoto, H]] | [[Category: Hashimoto, H]] |
Revision as of 20:45, 5 August 2016
Mouse UHRF1 SRA domain bound with hemi-methylated CpG, crystal structure in space group P21
|
Categories: Lk3 transgenic mice | Cheng, X | Hashimoto, H | Horton, J R | Zhang, X | 5-methylcytosine | Base flipping | Cell cycle | Cpg methylation | Developmental protein | Dna damage | Dna repair | Dna-binding | Ligase | Ligase-dna complex | Metal-binding | Nucleus | Phosphoprotein | Transcription | Transcription regulation | Ubl conjugation pathway | Uhrf1 | Zinc-finger