5kva
From Proteopedia
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- | '''Unreleased structure''' | ||
- | + | ==Crystal Structure of sorghum caffeoyl-CoA O-methyltransferase (CCoAOMT)== | |
+ | <StructureSection load='5kva' size='340' side='right' caption='[[5kva]], [[Resolution|resolution]] 1.83Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[5kva]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KVA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KVA FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kva FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kva OCA], [http://pdbe.org/5kva PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kva RCSB], [http://www.ebi.ac.uk/pdbsum/5kva PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kva ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Caffeoyl-CoA 3-O-methyltransferase (CCoAOMT) is an S-adenosyl methionine (SAM)-dependent O-methyltransferase responsible for methylation of the meta-hydroxyl group of caffeoyl-CoA, on the pathway to monolignols with their ring methoxylation status characteristic of guaiacyl or syringyl units in lignin. In order to better understand the unique class of type-2 O-methyltransferases from monocots, we have characterized CCoAOMT from sorghum (Sorghum bicolor) (SbCCoAOMT), including the SAM binary complex crystal structure, steady state enzyme kinetics, isothermal titration calorimetry (ITC), inductively coupled plasma-optical emission spectroscopy (ICP-OES) and molecular docking. Key amino acid residues were validated with site-directed mutagenesis. ITC data indicated a sequential binding mechanism for SbCCoAOMT, wherein SAM binds prior to caffeoyl-CoA, and the enzyme showed allosteric behavior with respect to it. 5-Hydroxyferuloyl-CoA was not a substrate for SbCCoAOMT. We propose a catalytic mechanism in which Lys180 acts as a catalytic base and deprotonates the reactive hydroxyl group of caffeoyl-CoA. This deprotonation is facilitated by the coordination of the reactive hydroxyl group by Ca2+ in the active site, lowering the pKa of the 3'-OH group. Collectively, these data give a new perspective on the catalytic mechanism of CCoAOMTs and provide a basis for the functional diversity exhibited by type-2 plant OMTs that contain a unique insertion loop (residues 208-231) conferring affinity for phenylpropanoid-CoA thioesters. | ||
- | + | Determination of the structure and catalytic mechanism of Sorghum bicolor caffeoyl-CoA O-methyltransferase.,Walker AM, Sattler SA, Regner MR, Jones JP, Ralph J, Vermerris W, Sattler SE, Kang C Plant Physiol. 2016 Jul 25. pii: pp.00845.2016. PMID:27457122<ref>PMID:27457122</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
+ | <div class="pdbe-citations 5kva" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Jones, J P]] | ||
+ | [[Category: Kang, C]] | ||
+ | [[Category: Ralph, J]] | ||
+ | [[Category: Regner, M]] | ||
+ | [[Category: Sattler, S A]] | ||
+ | [[Category: Sattler, S E]] | ||
+ | [[Category: Vermerris, W]] | ||
+ | [[Category: Walker, A M]] | ||
+ | [[Category: Caffeoyl-coa o-methyltransferase]] | ||
+ | [[Category: Ccoaomt]] | ||
+ | [[Category: Ccomt omt]] | ||
+ | [[Category: Coenzyme some]] | ||
+ | [[Category: Methyltransferase]] | ||
+ | [[Category: Sam o-methyltransferase]] | ||
+ | [[Category: Sbccoaomt]] | ||
+ | [[Category: Transferase]] |
Revision as of 16:08, 10 August 2016
Crystal Structure of sorghum caffeoyl-CoA O-methyltransferase (CCoAOMT)
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