1ng0
From Proteopedia
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|PDB= 1ng0 |SIZE=350|CAPTION= <scene name='initialview01'>1ng0</scene>, resolution 2.7Å | |PDB= 1ng0 |SIZE=350|CAPTION= <scene name='initialview01'>1ng0</scene>, resolution 2.7Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=CA:CALCIUM ION'>CA</scene> | + | |LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[1f2n|1F2N]], [[1sbv|1SBV]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ng0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ng0 OCA], [http://www.ebi.ac.uk/pdbsum/1ng0 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ng0 RCSB]</span> | ||
}} | }} | ||
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[[Category: Tars, K.]] | [[Category: Tars, K.]] | ||
[[Category: Zeltins, A.]] | [[Category: Zeltins, A.]] | ||
| - | [[Category: CA]] | ||
[[Category: icosahedral virus]] | [[Category: icosahedral virus]] | ||
[[Category: sobemovirus]] | [[Category: sobemovirus]] | ||
[[Category: virus assembly]] | [[Category: virus assembly]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:29:55 2008'' |
Revision as of 19:29, 30 March 2008
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| , resolution 2.7Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Related: | 1F2N, 1SBV
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
The three-dimensional structure of Cocksfoot mottle virus at 2.7A resolution
Overview
Cocksfoot mottle virus is a plant virus that belongs to the genus Sobemovirus. The structure of the virus has been determined at 2.7 A resolution. The icosahedral capsid has T = 3 quasisymmetry and 180 copies of the coat protein. Except for a couple of stacked bases, the viral RNA is not visible in the electron density map. The coat protein has a jelly-roll beta-sandwich fold and its conformation is very similar to that of other sobemoviruses and tobacco necrosis virus. The N-terminal arm of one of the three quasiequivalent subunits is partly ordered and follows the same path in the capsid as the arm in rice yellow mottle virus, another sobemovirus. In other sobemoviruses, the ordered arm follows a different path, but in both cases the arms from three subunits meet and form a similar structure at a threefold axis. A comparison of the structures and sequences of viruses in this family shows that the only conserved parts of the protein-protein interfaces are those that form binding sites for calcium ions. Still, the relative orientations and position of the subunits are maintained.
About this Structure
1NG0 is a Single protein structure of sequence from Cocksfoot mottle virus. Full crystallographic information is available from OCA.
Reference
The three-dimensional structure of cocksfoot mottle virus at 2.7 A resolution., Tars K, Zeltins A, Liljas L, Virology. 2003 Jun 5;310(2):287-97. PMID:12781716
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