1ngx
From Proteopedia
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|PDB= 1ngx |SIZE=350|CAPTION= <scene name='initialview01'>1ngx</scene>, resolution 1.80Å | |PDB= 1ngx |SIZE=350|CAPTION= <scene name='initialview01'>1ngx</scene>, resolution 1.80Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=JEF:O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)'>JEF</scene> | + | |LIGAND= <scene name='pdbligand=JEF:O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE+GLYCOL+500)'>JEF</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY=[[3fct|3FCT]], [[1n7m|1N7M]], [[1ngw|1NGW]], [[1ngy|1NGY]], [[1ngz|1NGZ]] | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ngx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ngx OCA], [http://www.ebi.ac.uk/pdbsum/1ngx PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ngx RCSB]</span> | ||
}} | }} | ||
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[[Category: Stevens, R C.]] | [[Category: Stevens, R C.]] | ||
[[Category: Yin, J.]] | [[Category: Yin, J.]] | ||
| - | [[Category: JEF]] | ||
[[Category: antibody]] | [[Category: antibody]] | ||
[[Category: antigen binding fragment (fab)]] | [[Category: antigen binding fragment (fab)]] | ||
[[Category: immunoglobulin]] | [[Category: immunoglobulin]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:30:14 2008'' |
Revision as of 19:30, 30 March 2008
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| , resolution 1.80Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Related: | 3FCT, 1N7M, 1NGW, 1NGY, 1NGZ
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Chimeric Germline Fab 7g12 with jeffamine fragment bound
Overview
The crystal structure of the Michaelis complex between the Fab fragment of ferrochelatase antibody 7G12 and its substrate mesoporphyrin has been solved to 2.6-A resolution. The antibody-bound mesoporphyrin clearly adopts a nonplanar conformation and reveals that the antibody catalyzes the porphyrin metallation reaction by straining/distorting the bound substrate toward the transition-state configuration. The crystal structures of the Fab fragment of the germ-line precursor antibody to 7G12 and its complex with the hapten N-methylmesoporphyrin have also been solved. A comparison of these structures with the corresponding structures of the affinity-matured antibody 7G12 reveals the molecular mechanism by which the immune system evolves binding energy to catalyze this reaction.
About this Structure
1NGX is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
Structural evidence for substrate strain in antibody catalysis., Yin J, Andryski SE, Beuscher AE 4th, Stevens RC, Schultz PG, Proc Natl Acad Sci U S A. 2003 Feb 4;100(3):856-61. Epub 2003 Jan 24. PMID:12552112 [[Category: ]]
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