This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3df7
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of a putative ATP-grasp superfamily protein from Archaeoglobus fulgidus== | ==Crystal structure of a putative ATP-grasp superfamily protein from Archaeoglobus fulgidus== | ||
<StructureSection load='3df7' size='340' side='right' caption='[[3df7]], [[Resolution|resolution]] 1.87Å' scene=''> | <StructureSection load='3df7' size='340' side='right' caption='[[3df7]], [[Resolution|resolution]] 1.87Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3df7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[3df7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arcfl Arcfl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DF7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DF7 FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr> | ||
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AF_1061 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2234 | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AF_1061 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2234 ARCFL])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3df7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3df7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3df7 RCSB], [http://www.ebi.ac.uk/pdbsum/3df7 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3df7 TOPSAN]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3df7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3df7 OCA], [http://pdbe.org/3df7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3df7 RCSB], [http://www.ebi.ac.uk/pdbsum/3df7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3df7 ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3df7 TOPSAN]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 16: | Line 17: | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3df7 ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Arcfl]] |
[[Category: Burley, S K]] | [[Category: Burley, S K]] | ||
[[Category: Structural genomic]] | [[Category: Structural genomic]] | ||
[[Category: Sugadev, R]] | [[Category: Sugadev, R]] | ||
[[Category: Swaminathan, S]] | [[Category: Swaminathan, S]] | ||
| + | [[Category: Archaeoglobus fulgidus]] | ||
[[Category: Atp-grasp superfamily]] | [[Category: Atp-grasp superfamily]] | ||
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] | ||
Revision as of 12:20, 11 August 2016
Crystal structure of a putative ATP-grasp superfamily protein from Archaeoglobus fulgidus
| |||||||||||
