4h8n
From Proteopedia
(Difference between revisions)
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- | {{STRUCTURE_4h8n| PDB=4h8n | SCENE= }} | ||
- | ===Crystal structure of conjugated polyketone reductase C2 from candida parapsilosis complexed with NADPH=== | ||
- | {{ABSTRACT_PUBMED_23828603}} | ||
- | == | + | ==Crystal structure of conjugated polyketone reductase C2 from candida parapsilosis complexed with NADPH== |
- | [[4h8n]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_22019 Atcc 22019]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H8N OCA]. | + | <StructureSection load='4h8n' size='340' side='right' caption='[[4h8n]], [[Resolution|resolution]] 1.80Å' scene=''> |
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[4h8n]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_22019 Atcc 22019]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4H8N FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr> | ||
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3vxg|3vxg]]</td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cpr-c2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5480 ATCC 22019])</td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-dehydropantolactone_reductase_((Si)-specific) 2-dehydropantolactone reductase ((Si)-specific)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.214 1.1.1.214] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4h8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h8n OCA], [http://pdbe.org/4h8n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4h8n RCSB], [http://www.ebi.ac.uk/pdbsum/4h8n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4h8n ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Conjugated polyketone reductase C2 (CPR-C2) from Candida parapsilosis IFO 0708, identified as a nicotinamide adenine dinucleotide phosphate (NADPH)-dependent ketopantoyl lactone reductase, belongs to the aldo-keto reductase superfamily. This enzyme reduces ketopantoyl lactone to D-pantoyl lactone in a strictly stereospecific manner. To elucidate the structural basis of the substrate specificity, we determined the crystal structures of the apo CPR-C2 and CPR-C2/NADPH complex at 1.70 and 1.80 A resolutions, respectively. CPR-C2 adopted a triose-phosphate isomerase barrel fold at the core of the structure. Binding with the cofactor NADPH induced conformational changes in which Thr27 and Lys28 moved 15 and 5.0 A, respectively, in the close vicinity of the adenosine 2'-phosphate group of NADPH to form hydrogen bonds. Based on the comparison of the CPR-C2/NADPH structure with 3-alpha-hydroxysteroid dehydrogenase and mutation analyses, we constructed substrate binding models with ketopantoyl lactone, which provided insight into the substrate specificity by the cofactor-induced structure. The results will be useful for the rational design of CPR-C2 mutants targeted for use in the industrial manufacture of ketopantoyl lactone. | ||
- | + | Structure of conjugated polyketone reductase from Candida parapsilosis IFO 0708 reveals conformational changes for substrate recognition upon NADPH binding.,Qin HM, Yamamura A, Miyakawa T, Kataoka M, Nagai T, Kitamura N, Urano N, Maruoka S, Ohtsuka J, Nagata K, Shimizu S, Tanokura M Appl Microbiol Biotechnol. 2013 Jul 5. PMID:23828603<ref>PMID:23828603</ref> | |
- | <ref | + | |
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 4h8n" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
[[Category: Atcc 22019]] | [[Category: Atcc 22019]] | ||
- | [[Category: Kataoka, M | + | [[Category: Kataoka, M]] |
- | [[Category: Maruoka, S | + | [[Category: Maruoka, S]] |
- | [[Category: Miyakawa, T | + | [[Category: Miyakawa, T]] |
- | [[Category: Nagata, K | + | [[Category: Nagata, K]] |
- | [[Category: Ohtsuka, J | + | [[Category: Ohtsuka, J]] |
- | [[Category: Qin, H M | + | [[Category: Qin, H M]] |
- | [[Category: Shimizu, S | + | [[Category: Shimizu, S]] |
- | [[Category: Tanokura, M | + | [[Category: Tanokura, M]] |
- | [[Category: Yamamura, A | + | [[Category: Yamamura, A]] |
[[Category: D-pantoyl lactone]] | [[Category: D-pantoyl lactone]] | ||
[[Category: Oxidoreductase]] | [[Category: Oxidoreductase]] | ||
[[Category: Tim barrel]] | [[Category: Tim barrel]] |
Revision as of 15:30, 11 August 2016
Crystal structure of conjugated polyketone reductase C2 from candida parapsilosis complexed with NADPH
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Categories: Atcc 22019 | Kataoka, M | Maruoka, S | Miyakawa, T | Nagata, K | Ohtsuka, J | Qin, H M | Shimizu, S | Tanokura, M | Yamamura, A | D-pantoyl lactone | Oxidoreductase | Tim barrel