4dji

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:4dji.png|left|200px]]
 
-
<!--
+
==Structure of glutamate-GABA antiporter GadC==
-
The line below this paragraph, containing "STRUCTURE_4dji", creates the "Structure Box" on the page.
+
<StructureSection load='4dji' size='340' side='right' caption='[[4dji]], [[Resolution|resolution]] 3.19&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[4dji]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DJI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DJI FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4djk|4djk]]</td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gadC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
-
{{STRUCTURE_4dji| PDB=4dji | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dji OCA], [http://pdbe.org/4dji PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4dji RCSB], [http://www.ebi.ac.uk/pdbsum/4dji PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4dji ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/GADC_ECOLI GADC_ECOLI]] Involved in glutamate-dependent acid resistance. Imports glutamate inside the cell while simultaneously exporting to the periplasm the GABA produced by GadA and GadB. The gad system helps to maintain a near-neutral intracellular pH when cells are exposed to extremely acidic conditions. The ability to survive transit through the acidic conditions of the stomach is essential for successful colonization of the mammalian host by commensal and pathogenic bacteria.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Food-borne hemorrhagic Escherichia coli, exemplified by the strains O157:H7 and O104:H4 (refs 1, 2), require elaborate acid-resistance systems (ARs) to survive the extremely acidic environment such as the stomach (pH approximately 2). AR2 expels intracellular protons through the decarboxylation of L-glutamate (Glu) in the cytoplasm and exchange of the reaction product gamma-aminobutyric acid (GABA) with extracellular Glu. The latter process is mediated by the Glu-GABA antiporter GadC, a representative member of the amino-acid-polyamine-organocation superfamily of membrane transporters. The functional mechanism of GadC remains largely unknown. Here we show, with the use of an in vitro proteoliposome-based assay, that GadC transports GABA/Glu only under acidic conditions, with no detectable activity at pH values higher than 6.5. We determined the crystal structure of E. coli GadC at 3.1 A resolution under basic conditions. GadC, comprising 12 transmembrane segments (TMs), exists in a closed state, with its carboxy-terminal domain serving as a plug to block an otherwise inward-open conformation. Structural and biochemical analyses reveal the essential transport residues, identify the transport path and suggest a conserved transport mechanism involving the rigid-body rotation of a helical bundle for GadC and other amino acid antiporters.
-
===Structure of glutamate-GABA antiporter GadC===
+
Structure and mechanism of a glutamate-GABA antiporter.,Ma D, Lu P, Yan C, Fan C, Yin P, Wang J, Shi Y Nature. 2012 Mar 11;483(7391):632-6. doi: 10.1038/nature10917. PMID:22407317<ref>PMID:22407317</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_22407317}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 4dji" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 22407317 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_22407317}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Ecoli]]
-
[[4dji]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DJI OCA].
+
[[Category: Fan, C]]
-
 
+
[[Category: Lu, P L]]
-
==Reference==
+
[[Category: Ma, D]]
-
<ref group="xtra">PMID:022407317</ref><references group="xtra"/>
+
[[Category: Shi, Y G]]
-
[[Category: Escherichia coli]]
+
[[Category: Wang, J W]]
-
[[Category: Fan, C.]]
+
[[Category: Yan, C Y]]
-
[[Category: Lu, P L.]]
+
[[Category: Yin, P]]
-
[[Category: Ma, D.]]
+
-
[[Category: Shi, Y G.]]
+
-
[[Category: Wang, J W.]]
+
-
[[Category: Yan, C Y.]]
+
-
[[Category: Yin, P.]]
+
[[Category: Glutamate-gaba antiporter]]
[[Category: Glutamate-gaba antiporter]]
[[Category: Leut fold]]
[[Category: Leut fold]]
[[Category: Transport protein]]
[[Category: Transport protein]]

Revision as of 17:29, 11 August 2016

Structure of glutamate-GABA antiporter GadC

4dji, resolution 3.19Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools