This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3d5l

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
 +
==Crystal structure of regulatory protein RecX==
==Crystal structure of regulatory protein RecX==
<StructureSection load='3d5l' size='340' side='right' caption='[[3d5l]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
<StructureSection load='3d5l' size='340' side='right' caption='[[3d5l]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3d5l]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactobacillus_reuteri Lactobacillus reuteri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D5L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D5L FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3d5l]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactobacillus_reuteri_100-23 Lactobacillus reuteri 100-23]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D5L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3D5L FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Lreu23DRAFT_0930 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1598 Lactobacillus reuteri])</td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Lreu23DRAFT_0930 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=349123 Lactobacillus reuteri 100-23])</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d5l OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3d5l RCSB], [http://www.ebi.ac.uk/pdbsum/3d5l PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3d5l TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d5l OCA], [http://pdbe.org/3d5l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3d5l RCSB], [http://www.ebi.ac.uk/pdbsum/3d5l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3d5l ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3d5l TOPSAN]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 15: Line 16:
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d5l ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Lactobacillus reuteri]]
+
[[Category: Lactobacillus reuteri 100-23]]
[[Category: Agarwal, R]]
[[Category: Agarwal, R]]
[[Category: Burley, S K]]
[[Category: Burley, S K]]

Revision as of 17:36, 11 August 2016

Crystal structure of regulatory protein RecX

3d5l, resolution 2.35Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools