1ojr
From Proteopedia
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|PDB= 1ojr |SIZE=350|CAPTION= <scene name='initialview01'>1ojr</scene>, resolution 1.35Å | |PDB= 1ojr |SIZE=350|CAPTION= <scene name='initialview01'>1ojr</scene>, resolution 1.35Å | ||
|SITE= <scene name='pdbsite=ZN:Dox+Binding+Site+For+Chain+A'>ZN</scene> | |SITE= <scene name='pdbsite=ZN:Dox+Binding+Site+For+Chain+A'>ZN</scene> | ||
| - | |LIGAND= <scene name='pdbligand= | + | |LIGAND= <scene name='pdbligand=2HA:DIHYDROXYACETONE'>2HA</scene>, <scene name='pdbligand=DIO:1,4-DIETHYLENE+DIOXIDE'>DIO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Rhamnulose-1-phosphate_aldolase Rhamnulose-1-phosphate aldolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.19 4.1.2.19] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Rhamnulose-1-phosphate_aldolase Rhamnulose-1-phosphate aldolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.19 4.1.2.19] </span> |
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY= | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ojr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ojr OCA], [http://www.ebi.ac.uk/pdbsum/1ojr PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ojr RCSB]</span> | ||
}} | }} | ||
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[[Category: Merkel, I.]] | [[Category: Merkel, I.]] | ||
[[Category: Schulz, G E.]] | [[Category: Schulz, G E.]] | ||
| - | [[Category: 2HA]] | ||
| - | [[Category: DIO]] | ||
| - | [[Category: GOL]] | ||
| - | [[Category: PO4]] | ||
| - | [[Category: ZN]] | ||
[[Category: aldolase (lyase)]] | [[Category: aldolase (lyase)]] | ||
[[Category: bacterial l-rhamnose metabolism]] | [[Category: bacterial l-rhamnose metabolism]] | ||
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[[Category: zinc enzyme]] | [[Category: zinc enzyme]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:46:19 2008'' |
Revision as of 19:46, 30 March 2008
| |||||||
| , resolution 1.35Å | |||||||
|---|---|---|---|---|---|---|---|
| Sites: | |||||||
| Ligands: | , , , , | ||||||
| Activity: | Rhamnulose-1-phosphate aldolase, with EC number 4.1.2.19 | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT E192A)
Overview
The structure of L-rhamnulose-1-phosphate aldolase has been established at 1.35 A resolution in a crystal form that was obtained by a surface mutation and has one subunit of the C(4)-symmetric tetramer in the asymmetric unit. It confirms an earlier 2.7 A resolution structure which was determined in a complicated crystal form with 20 subunits per asymmetric unit. The chain fold and the active center are similar to those of L-fuculose-1-phosphate aldolase and L-ribulose-5-phosphate 4-epimerase. The active center similarity is supported by a structural comparison of all three enzymes and by the binding mode of the inhibitor phosphoglycolohydroxamate at the site of the product dihydroxyacetone phosphate for the two aldolases. The sensitivity of the catalytic rate to several mutations and a comparison with the established mechanism of the related aldolase give rise to a putative catalytic mechanism. This mechanism involves the same binding mode of the second product L-lactaldehyde in both aldolases, except for a 180 degrees flip of the aldehyde group distinguishing between the two epimers rhamnulose and fuculose. The N-terminal domain exhibits a correlated anisotropic mobility that channels the isotropic Brownian motion into a directed movement of the catalytic base and the substrate phosphate on the N-domain toward the zinc ion and the lactaldehyde on the C-terminal domain. We suggest that this movement supports the catalysis mechanically.
About this Structure
1OJR is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.
Reference
Structure and catalytic mechanism of L-rhamnulose-1-phosphate aldolase., Kroemer M, Merkel I, Schulz GE, Biochemistry. 2003 Sep 16;42(36):10560-8. PMID:12962479
Page seeded by OCA on Sun Mar 30 22:46:19 2008
Categories: Escherichia coli | Rhamnulose-1-phosphate aldolase | Single protein | Kroemer, M. | Merkel, I. | Schulz, G E. | Aldolase (lyase) | Bacterial l-rhamnose metabolism | C4-tetramer | Class ii | Cleavage of l-rhamnulose-1-phosphate to dihydroxyacetonephosphate and l-lactaldehyde | Zinc enzyme
