5l3j

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m (Protected "5l3j" [edit=sysop:move=sysop])
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'''Unreleased structure'''
 
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The entry 5l3j is ON HOLD
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==ESCHERICHIA COLI DNA GYRASE B IN COMPLEX WITH BENZOTHIAZOLE-BASED INHIBITOR==
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<StructureSection load='5l3j' size='340' side='right' caption='[[5l3j]], [[Resolution|resolution]] 2.83&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5l3j]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5L3J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5L3J FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=6G9:2-[[2-[[4,5-BIS(BROMANYL)-1~{H}-PYRROL-2-YL]CARBONYLAMINO]-1,3-BENZOTHIAZOL-6-YL]AMINO]-2-OXIDANYLIDENE-ETHANOIC+ACID'>6G9</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_topoisomerase_(ATP-hydrolyzing) DNA topoisomerase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.99.1.3 5.99.1.3] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5l3j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5l3j OCA], [http://pdbe.org/5l3j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5l3j RCSB], [http://www.ebi.ac.uk/pdbsum/5l3j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5l3j ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/GYRB_ECOLI GYRB_ECOLI]] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings.<ref>PMID:12051843</ref> <ref>PMID:18642932</ref> <ref>PMID:20675723</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Bacterial DNA gyrase and topoisomerase IV control the topological state of DNA during replication and are validated targets for antibacterial drug discovery. Starting from our recently reported 4,5,6,7-tetrahydrobenzo[1,2-d]thiazole-based DNA gyrase B inhibitors, we replaced their central core with benzothiazole-2,6-diamine scaffold and interchanged substituents in positions 2 and 6. This resulted in equipotent nanomolar inhibitors of DNA gyrase from Escherichia coli displaying improved inhibition of Staphylococcus aureus DNA gyrase and topoisomerase IV from both bacteria. Compound 27 was the most balanced inhibitor of DNA gyrase and topoisomerase IV both from E. coli and S. aureus. The crystal structure of the 2-((2-(4,5-dibromo-1H-pyrrole-2-carboxamido)benzothiazol-6-yl)amino)-2-oxoacetic acid (24) in complex with E. coli DNA gyrase B revealed the binding mode of the inhibitor in the ATP-binding pocket. Only some compounds possessed weak antibacterial activity against Gram-positive bacteria. These results provide a basis for structure-based optimization towards dual DNA gyrase and topoisomerase IV inhibitors with antibacterial activity.
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Authors: Gjorgjieva, M., Tomasic, T., Barancokova, M., Katsamakas, S., Ilas, J., Montalvao, S., Tammella, P., Peterlin Masic, L., Kikelj, D.
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Discovery of Benzothiazole Scaffold-Based DNA Gyrase B Inhibitors.,Gjorgjieva M, Tomasic T, Barancokova M, Katsamakas S, Ilas J, Tammela P, Peterlin Masic L, Kikelj D J Med Chem. 2016 Aug 19. PMID:27541007<ref>PMID:27541007</ref>
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Description: ESCHERICHIA COLI DNA GYRASE B IN COMPLEX WITH BENZOTHIAZOLE-BASED INHIBITOR
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 5l3j" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Barancokova, M]]
[[Category: Barancokova, M]]
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[[Category: Katsamakas, S]]
 
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[[Category: Tammella, P]]
 
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[[Category: Montalvao, S]]
 
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[[Category: Peterlin Masic, L]]
 
[[Category: Gjorgjieva, M]]
[[Category: Gjorgjieva, M]]
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[[Category: Kikelj, D]]
 
[[Category: Ilas, J]]
[[Category: Ilas, J]]
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[[Category: Katsamakas, S]]
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[[Category: Kikelj, D]]
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[[Category: Masic, L Peterlin]]
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[[Category: Montalvao, S]]
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[[Category: Tammella, P]]
[[Category: Tomasic, T]]
[[Category: Tomasic, T]]
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[[Category: Complex]]
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[[Category: Gyrase b]]
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[[Category: Gyrb]]
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[[Category: Inhibitor]]
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[[Category: Isomerase]]
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[[Category: Proteros biostructure]]
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[[Category: Proteros biostructures gmbh]]

Revision as of 14:00, 10 September 2016

ESCHERICHIA COLI DNA GYRASE B IN COMPLEX WITH BENZOTHIAZOLE-BASED INHIBITOR

5l3j, resolution 2.83Å

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