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1oxw
From Proteopedia
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|PDB= 1oxw |SIZE=350|CAPTION= <scene name='initialview01'>1oxw</scene>, resolution 2.20Å | |PDB= 1oxw |SIZE=350|CAPTION= <scene name='initialview01'>1oxw</scene>, resolution 2.20Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= | + | |LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY= | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oxw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oxw OCA], [http://www.ebi.ac.uk/pdbsum/1oxw PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1oxw RCSB]</span> | ||
}} | }} | ||
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[[Category: alpha/beta/alpha in content. possesses a central six-stranded beta sheet with alpha-helices front & back]] | [[Category: alpha/beta/alpha in content. possesses a central six-stranded beta sheet with alpha-helices front & back]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:52:00 2008'' |
Revision as of 19:52, 30 March 2008
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| , resolution 2.20Å | |||||||
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| Ligands: | |||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
The Crystal Structure of SeMet Patatin
Overview
Patatin is a nonspecific lipid acyl hydrolase that accounts for approximately 40% of the total soluble protein in mature potato tubers, and it has potent insecticidal activity against the corn rootworm. We determined the X-ray crystal structure of a His-tagged variant of an isozyme of patatin, Pat17, to 2.2 A resolution, employing SeMet multiwavelength anomalous dispersion (MAD) phasing methods. The patatin crystal structure has three molecules in the asymmetric unit, an R-factor of 22.0%, and an R(free) of 27.2% (for 10% of the data not included in the refinement) and includes 498 water molecules. The structure notably revealed that patatin has a Ser-Asp catalytic dyad and an active site like that of human cytosolic phospholipase A(2) (cPLA(2)) [Dessen, A., et al. (1999) Cell 97, 349-360]. In addition, patatin has a folding topology related to that of the catalytic domain of cPLA(2) and unlike the canonical alpha/beta-hydrolase fold. The structure confirms our site-directed mutagenesis and bioactivity data that initially suggested patatin possessed a Ser-Asp catalytic dyad. Alanine-scanning mutagenesis revealed that Ser77 and Asp215 were critical for both esterase and bioactivity, consistent with prior work implicating a Ser residue [Strickland, J. H., et al. (1995) Plant Physiol. 109, 667-674] and a Ser-Asp dyad [Hirschberg, H. J. H. B., et al. (2001) Eur. J. Biochem. 268, 5037-5044] in patatin's catalytic activity. The crystal structure aids the understanding of other structure-function relationships in patatin. Patatin does not display interfacial activation, a hallmark feature of lipases, and this is likely due to the fact that it lacks a flexible lid that can shield the active site.
About this Structure
1OXW is a Single protein structure of sequence from Solanum cardiophyllum. Full crystallographic information is available from OCA.
Reference
The crystal structure, mutagenesis, and activity studies reveal that patatin is a lipid acyl hydrolase with a Ser-Asp catalytic dyad., Rydel TJ, Williams JM, Krieger E, Moshiri F, Stallings WC, Brown SM, Pershing JC, Purcell JP, Alibhai MF, Biochemistry. 2003 Jun 10;42(22):6696-708. PMID:12779324
Page seeded by OCA on Sun Mar 30 22:52:00 2008
Categories: Single protein | Solanum cardiophyllum | Alibhai, M F. | Brown, S M. | Krieger, E. | Moshiri, F. | Pershing, J C. | Purcell, J P. | Rydel, T J. | Stallings, W C. | Williams, J M. | Alpha/beta class fold with approximately three layer | Alpha/beta/alpha in content. possesses a central six-stranded beta sheet with alpha-helices front & back
