5imf

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m (Protected "5imf" [edit=sysop:move=sysop])
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'''Unreleased structure'''
 
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The entry 5imf is ON HOLD until Paper Publication
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==Xanthomonas campestris Peroxiredoxin Q - Structure F5==
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<StructureSection load='5imf' size='340' side='right' caption='[[5imf]], [[Resolution|resolution]] 1.04&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5imf]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IMF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5IMF FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5iiz|5iiz]], [[5im9|5im9]], [[5ima|5ima]], [[5imc|5imc]], [[5imd|5imd]], [[5imv|5imv]], [[5imz|5imz]], [[5io2|5io2]], [[5io0|5io0]], [[5iny|5iny]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5imf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5imf OCA], [http://pdbe.org/5imf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5imf RCSB], [http://www.ebi.ac.uk/pdbsum/5imf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5imf ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Peroxiredoxins (Prxs) are ubiquitous cysteine-based peroxidases that guard cells against oxidative damage, are virulence factors for pathogens, and are involved in eukaryotic redox regulatory pathways. We have analyzed catalytically active crystals to capture atomic resolution snapshots of a PrxQ subfamily enzyme (from Xanthomonas campestris) proceeding through thiolate, sulfenate, and sulfinate species. These analyses provide structures of unprecedented accuracy for seeding theoretical studies, and reveal conformational intermediates giving insight into the reaction pathway. Based on a highly non-standard geometry seen for the sulfenate intermediate, we infer that the sulfenate formation itself can strongly promote local unfolding of the active site to enhance productive catalysis. Further, these structures reveal that preventing local unfolding, in this case via crystal contacts, results in facile hyperoxidative inactivation even for Prxs normally resistant to such inactivation. This supports previous proposals that conformation-specific inhibitors may be useful for achieving selective inhibition of Prxs that are drug targets.
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Authors: Perkins, A., Parsonage, D., Nelson, K.J., Poole, L.B., Karplus, A.
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Peroxiredoxin Catalysis at Atomic Resolution.,Perkins A, Parsonage D, Nelson KJ, Ogba OM, Cheong PH, Poole LB, Karplus PA Structure. 2016 Sep 1. pii: S0969-2126(16)30223-4. doi:, 10.1016/j.str.2016.07.012. PMID:27594682<ref>PMID:27594682</ref>
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Description: Xanthomonas campestris Peroxiredoxin Q -Structure F5
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Perkins, A]]
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<div class="pdbe-citations 5imf" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Karplus, A]]
[[Category: Karplus, A]]
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[[Category: Nelson, K.J]]
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[[Category: Nelson, K J]]
[[Category: Parsonage, D]]
[[Category: Parsonage, D]]
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[[Category: Poole, L.B]]
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[[Category: Perkins, A]]
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[[Category: Poole, L B]]
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[[Category: Bcp]]
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[[Category: Oxidoreductase]]
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[[Category: Peroxidase]]
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[[Category: Prxq]]
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[[Category: Redox]]

Revision as of 13:52, 21 September 2016

Xanthomonas campestris Peroxiredoxin Q - Structure F5

5imf, resolution 1.04Å

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