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| - | ==Crystal structure of peptide deformylase, Xoo1075, from Xanthomonas oryzae pv. oryzae KACC10331==
| + | #REDIRECT [[5e5d]] This PDB entry is obsolete and replaced by 5e5d |
| - | <StructureSection load='3dld' size='340' side='right' caption='[[3dld]], [[Resolution|resolution]] 2.60Å' scene=''>
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| - | == Structural highlights ==
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| - | <table><tr><td colspan='2'>[[3dld]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanoo Xanoo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DLD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DLD FirstGlance]. <br>
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| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
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| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">def, XOO1075 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=64187 XANOO])</td></tr>
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| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
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| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dld FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dld OCA], [http://pdbe.org/3dld PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dld RCSB], [http://www.ebi.ac.uk/pdbsum/3dld PDBsum]</span></td></tr>
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| - | </table>
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| - | == Function ==
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| - | [[http://www.uniprot.org/uniprot/Q5H3Z2_XANOR Q5H3Z2_XANOR]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
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| - | == Evolutionary Conservation ==
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| - | [[Image:Consurf_key_small.gif|200px|right]]
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| - | Check<jmol>
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| - | <jmolCheckbox>
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| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dl/3dld_consurf.spt"</scriptWhenChecked>
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| - | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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| - | <text>to colour the structure by Evolutionary Conservation</text>
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| - | </jmolCheckbox>
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| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dld ConSurf].
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| - | <div style="clear:both"></div>
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| - | __TOC__
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| - | </StructureSection>
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| - | [[Category: Peptide deformylase]]
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| - | [[Category: Xanoo]]
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| - | [[Category: Jung, J H]]
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| - | [[Category: Kang, L W]]
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| - | [[Category: Kim, J K]]
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| - | [[Category: Ngo, H P.T]]
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| - | [[Category: Bacterial blight]]
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| - | [[Category: Hydrolase]]
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| - | [[Category: Xanthomonas oryzae pv. oryzae kacc10331]]
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| - | [[Category: Xoo1075]]
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