User:Matthew J Lowry/Sandbox 1
From Proteopedia
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== Structural Highlights == | == Structural Highlights == | ||
- | <scene name='74/745011/Montelukast_alone/ | + | <scene name='74/745011/Montelukast_alone/2'>Montelukast</scene> has the chemical formula of C<sub>35</sub>H<sub>36</sub>ClNO<sub>3</sub>S with a molecular weight of 586.187 Da <ref name="five">https://www3.rcsb.org/ligand/MTK</ref>. The primary target for Montelukast is Cysteinyl Leukotriene Receptor 1 (CysLTR1) which contains 337 amino acids with a molecular weight of 38,541 Da <ref name="six">http://www.uniprot.org/uniprot/Q9Y271#sequences</ref>. It has 4 extracellular domains, 4 cytoplasmic domains, and 7 helical transmembrane domains <ref name="seven">http://www.rcsb.org/pdb/protein/Q9Y271</ref>. Because no three-dimensional model was found for this protein on the PDB, Bandaru, S., et al used a multitude of programs to predict the structure of the protein <ref name="eight">Bandaru, S., Marri, V. K., Kasera, P., Kovuri, P., Girdhar, A., Mittal, D. R., . . . Nayarisseri, A. (2014). Structure based virtual screening of ligands to identify cysteinyl leukotriene receptor 1 antagonist. Bioinformation, 10(10), 652-657. doi:10.6026/97320630010652</ref>. [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4248348/figure/F1/ Figure 1] of their paper provides an image of their prediction. Though this provides a model for the CysLTR1 protein there is still no model for the complexing of Montelukast with its target protein. |
Montelukast, like any drug, can also bind to non-target proteins. One of these proteins is Cytochrome P450 2C8 (CYP2C8)(<scene name='74/745011/Initial/1'>2NNI</scene>). This protein is made of 490 amino acids and has a molecular weight of 55,825 Da <ref name="nine">http://www.uniprot.org/uniprot/P10632#sequences</ref>. The peptide chain of Cytochrome P450 2C8 consists of 51% alpha helices and 9% beta sheets<ref name="ten">Kabsch, W., & Sander, C. (1983, December). Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22(12), 2577-2637. doi:10.1002/bip.360221211</ref>. The structure was determined using the method of X-ray diffraction with a resolution of 2.8 Angstroms<ref name="eleven"> http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nni</ref>. Montelukast (<scene name='74/745011/Initial/3'>MTK</scene>) is held in place in the active site of CYP2C8 by hydrogen bonds between the side chain of Ser100 and the oxygens carboxyl group of Montelukast (resonance allows H-bond to either oxygens), and Val296 and the tertiary alcohol in Montelukast<ref name="twelve">http://cdn.rcsb.org//poseview/NN/2NNI/MTK/2NNI_MTK.png</ref>. Ser100 and Val296 are indicated in pink Residue Thr107 helps stabilize the polarity induced by the Chlorine <ref name="twelve"/>. Hydrophobic interactions from amino acids like Alanine, Isoleucine, and Phenylalanine throughout the active site also help stabilize the interaction <ref name="twelve"/>. The binding pocket can be three-dimensionally visualized using [http://www.rcsb.org/pdb/explore/jmol.do?structureId=2NNI&residueNr=MTK JSmol]. | Montelukast, like any drug, can also bind to non-target proteins. One of these proteins is Cytochrome P450 2C8 (CYP2C8)(<scene name='74/745011/Initial/1'>2NNI</scene>). This protein is made of 490 amino acids and has a molecular weight of 55,825 Da <ref name="nine">http://www.uniprot.org/uniprot/P10632#sequences</ref>. The peptide chain of Cytochrome P450 2C8 consists of 51% alpha helices and 9% beta sheets<ref name="ten">Kabsch, W., & Sander, C. (1983, December). Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22(12), 2577-2637. doi:10.1002/bip.360221211</ref>. The structure was determined using the method of X-ray diffraction with a resolution of 2.8 Angstroms<ref name="eleven"> http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nni</ref>. Montelukast (<scene name='74/745011/Initial/3'>MTK</scene>) is held in place in the active site of CYP2C8 by hydrogen bonds between the side chain of Ser100 and the oxygens carboxyl group of Montelukast (resonance allows H-bond to either oxygens), and Val296 and the tertiary alcohol in Montelukast<ref name="twelve">http://cdn.rcsb.org//poseview/NN/2NNI/MTK/2NNI_MTK.png</ref>. Ser100 and Val296 are indicated in pink Residue Thr107 helps stabilize the polarity induced by the Chlorine <ref name="twelve"/>. Hydrophobic interactions from amino acids like Alanine, Isoleucine, and Phenylalanine throughout the active site also help stabilize the interaction <ref name="twelve"/>. The binding pocket can be three-dimensionally visualized using [http://www.rcsb.org/pdb/explore/jmol.do?structureId=2NNI&residueNr=MTK JSmol]. |
Revision as of 03:33, 5 December 2016
Montelukast
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References
- ↑ Bentli, R., Ciftci, O., Cetin, A., and Otlu, A. (2016) Anti-inflammatory Montelukast prevents toxic effects of 2,3,7,8-tetrachlorodibenzo-p-dioxin: Oxidative stress, histological alterations in liver, and serum cytokine levels. Toxicology and Industrial Health, 32(5), 769-776. doi: 10.1177/0748233713505894
- ↑ Cylllyl, A., Kara, A., Ozdemir, T., Ogus, C. , and Gulkesen K. (2003) Effects of oral montelukast on airway function in acute asthma. Respiratory Medicine, 97(5), 533-536. doi: 10.1053/rmed.2003.1479
- ↑ 3.0 3.1 Nayak, A. (2004). A review of montelukast in the treatment of asthma and allergic rhinitis. Expert Opinion on Pharmacotherapy, 5:3, 679-686. doi:10.1517/14656566.5.3.679
- ↑ Paggiaro, P., Bacci, E. (2011) Montelukast in Asthma: A Review of its Efficacy and Place in Therapy. Therapeutic Advances in Chronic Disease, 2(1), 47-58. doi: 10.1177/ 2040622310383343
- ↑ https://www3.rcsb.org/ligand/MTK
- ↑ http://www.uniprot.org/uniprot/Q9Y271#sequences
- ↑ http://www.rcsb.org/pdb/protein/Q9Y271
- ↑ Bandaru, S., Marri, V. K., Kasera, P., Kovuri, P., Girdhar, A., Mittal, D. R., . . . Nayarisseri, A. (2014). Structure based virtual screening of ligands to identify cysteinyl leukotriene receptor 1 antagonist. Bioinformation, 10(10), 652-657. doi:10.6026/97320630010652
- ↑ http://www.uniprot.org/uniprot/P10632#sequences
- ↑ Kabsch, W., & Sander, C. (1983, December). Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22(12), 2577-2637. doi:10.1002/bip.360221211
- ↑ http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nni
- ↑ 12.0 12.1 12.2
- ↑ Diamant, Z., Mantzouranis, E., & Bjermer, L. (2009). Montelukast in the treatment of asthma and beyond. Expert Reviews, 5, 639-658. doi:10.1586/eci.09.62
- ↑ 14.0 14.1 14.2 Drazen, J., Elliot, I., & O’Byrne, P. (1999). Treatment of Asthma with Drugs Modifying the Leukotriene Pathway. The New England Journal of Medicine, 340, 197-206. doi:10.1056/NEJM199901213400306
- ↑ 15.0 15.1 15.2 15.3 Wenzel, S.E. (1997). Arachidonic Acid Metabolites: Mediators of Inflammation in Asthma. Pharmacotherapy, 17, 3S-12S. doi:10.1002/j.1875-9114.1997tbo3696.x
- ↑ 16.0 16.1 Tintinger, G., Feldman, C., Theron, A., and Anderson, R. (2010) Montelukast:more than a cysteinyl leukotriene receptor antagonist? The Scientific World Journal, 10, 2403-2413. doi:10.1100/tsw.2010.229.