Ribavirin1
From Proteopedia
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(New page: 1-β-D-ribofuranosyl-1H-1,2,4-triazole-3-carboxamide <ref name="gish">DOI: 10.1093/jac/dki405 </ref> <StructureSection load='' size='340' side='right' caption='Ribavirin PDB 4pb1' scen...) |
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== Protein Interaction == | == Protein Interaction == | ||
- | ===Ribavirin with | + | ===Ribavirin with RNA-dependent RNA polymerase=== |
Virally-encoded RNA-dependent RNA polymerase (RdRp) is critical for successful viral replication. The incorporation of nucleoside analogs, such as Ribavirin, by RdRp have been shown to induce error in viral replication | Virally-encoded RNA-dependent RNA polymerase (RdRp) is critical for successful viral replication. The incorporation of nucleoside analogs, such as Ribavirin, by RdRp have been shown to induce error in viral replication | ||
Ribavirin attaches to the binding pocket, which is comprised of tyrosine at position 344 and aspartic acid at positions 250, 346, and 347. The incorporation of Ribavirin into the RNA results in base-pairing with uracil or cytosine, which increases the mutation rate and leads to viral death. | Ribavirin attaches to the binding pocket, which is comprised of tyrosine at position 344 and aspartic acid at positions 250, 346, and 347. The incorporation of Ribavirin into the RNA results in base-pairing with uracil or cytosine, which increases the mutation rate and leads to viral death. | ||
<scene name='55/559112/Ribavirin_interacting_3sfu/4'>Ribavirin with 3SFU</scene> [[3sfu]] | <scene name='55/559112/Ribavirin_interacting_3sfu/4'>Ribavirin with 3SFU</scene> [[3sfu]] | ||
- | === Ribavirin with | + | === Ribavirin with CNT2=== |
Nucleoside transporters facilitate the transport of nucleosides across cell membranes to be used in protein synthesis. Concentrated NTs (CNTs) use the energy of ion gradients for active transportation , while equilibrative NTs (ENTs) transport nucleosides passively down their concentration gradient. Ribavirin is a substrate of ENT1, ENT2, and CNT2. CNT2 binds to the ribose of the ribavirin via hydrogen bonding involving glutamic acid at position 332, asparagine at position 368, and serine at position 371<ref>doi:10.7554/eLife.03604</ref>. | Nucleoside transporters facilitate the transport of nucleosides across cell membranes to be used in protein synthesis. Concentrated NTs (CNTs) use the energy of ion gradients for active transportation , while equilibrative NTs (ENTs) transport nucleosides passively down their concentration gradient. Ribavirin is a substrate of ENT1, ENT2, and CNT2. CNT2 binds to the ribose of the ribavirin via hydrogen bonding involving glutamic acid at position 332, asparagine at position 368, and serine at position 371<ref>doi:10.7554/eLife.03604</ref>. | ||
<scene name='55/559112/Ribavirin_interacting_4pb1/1'>Ribivirin with 4PB1</scene> [[4pb1]] | <scene name='55/559112/Ribavirin_interacting_4pb1/1'>Ribivirin with 4PB1</scene> [[4pb1]] |
Revision as of 18:59, 6 December 2016
1-β-D-ribofuranosyl-1H-1,2,4-triazole-3-carboxamide [1]
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References
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