5h3a

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'''Unreleased structure'''
 
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The entry 5h3a is ON HOLD until Paper Publication
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==Structural analysis of KSHV thymidylate synthase==
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<StructureSection load='5h3a' size='340' side='right' caption='[[5h3a]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5h3a]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H3A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5H3A FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=D16:TOMUDEX'>D16</scene>, <scene name='pdbligand=UMP:2-DEOXYURIDINE+5-MONOPHOSPHATE'>UMP</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5h38|5h38]], [[5h39|5h39]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5h3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h3a OCA], [http://pdbe.org/5h3a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5h3a RCSB], [http://www.ebi.ac.uk/pdbsum/5h3a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5h3a ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Kaposi's sarcoma-associated herpesvirus (KSHV) is a highly infectious human herpesvirus that causes Kaposi's sarcoma. KSHV encodes functional thymidylate synthase, which is a target for anticancer drugs such as raltitrexed or 5-fluorouracil. Thymidylate synthase catalyzes the conversion of 2'-deoxyuridine-5'-monophosphate (dUMP) to thymidine-5'-monophosphate (dTMP) using 5,10-methylenetetrahydrofolate (mTHF) as a co-substrate. The crystal structures of thymidylate synthase from KSHV (apo), complexes with dUMP (binary), and complexes with both dUMP and raltitrexed (ternary) were determined at 1.7 A, 2.0 A, and 2.4 A, respectively. While the ternary complex structures of human thymidylate synthase and E. coli thymidylate synthase had a closed conformation, the ternary complex structure of KSHV thymidylate synthase was observed in an open conformation, similar to that of rat thymidylate synthase. The complex structures of KSHV thymidylate synthase did not have a covalent bond between the sulfhydryl group of Cys219 and C6 atom of dUMP, unlike the human thymidylate synthase. The catalytic Cys residue demonstrated a dual conformation in the apo structure, and its sulfhydryl group was oriented toward the C6 atom of dUMP with no covalent bond upon ligand binding in the complex structures. These structural data provide the potential use of antifolates such as raltitrexed as a viral induced anticancer drug and structural basis to design drugs for targeting the thymidylate synthase of KSHV.
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Authors: Choi, Y.M., Yeo, H.K., Park, Y.W., Lee, J.Y.
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Structural Analysis of Thymidylate Synthase from Kaposi's Sarcoma-Associated Herpesvirus with the Anticancer Drug Raltitrexed.,Choi YM, Yeo HK, Park YW, Lee JY PLoS One. 2016 Dec 9;11(12):e0168019. doi: 10.1371/journal.pone.0168019., eCollection 2016. PMID:27936107<ref>PMID:27936107</ref>
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Description: Structural analysis of KSHV thymidylate synthase
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Park, Y.W]]
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<div class="pdbe-citations 5h3a" style="background-color:#fffaf0;"></div>
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[[Category: Choi, Y.M]]
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== References ==
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[[Category: Yeo, H.K]]
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<references/>
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[[Category: Lee, J.Y]]
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__TOC__
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</StructureSection>
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[[Category: Choi, Y M]]
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[[Category: Lee, J Y]]
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[[Category: Park, Y W]]
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[[Category: Yeo, H K]]
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[[Category: Dump]]
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[[Category: Inhibitor]]
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[[Category: Raltitrexed]]
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[[Category: Thymidylate synthase]]
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[[Category: Transferase]]

Revision as of 16:16, 18 January 2017

Structural analysis of KSHV thymidylate synthase

5h3a, resolution 2.40Å

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