5jbd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5jbd is ON HOLD until Paper Publication
+
==4,6-alpha-glucanotransferase GTFB from Lactobacillus reuteri 121==
 +
<StructureSection load='5jbd' size='340' side='right' caption='[[5jbd]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5jbd]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JBD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JBD FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dextransucrase Dextransucrase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.5 2.4.1.5] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jbd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jbd OCA], [http://pdbe.org/5jbd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jbd RCSB], [http://www.ebi.ac.uk/pdbsum/5jbd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jbd ProSAT]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Food processing and refining has dramatically changed the human diet, but little is known about whether this affected the evolution of enzymes in human microbiota. We present evidence that glycoside hydrolase family 70 (GH70) glucansucrases from lactobacilli, synthesizing alpha-glucan-type extracellular polysaccharides from sucrose, likely evolved from GH13 starch-acting alpha-amylases, via GH70 4,6-alpha-glucanotransferases. The crystal structure of a 4,6-alpha-glucanotransferase explains the mode of action and unique product specificity of these enzymes. While the alpha-amylase substrate-binding scaffold is retained, active-site loops adapted to favor transglycosylation over hydrolysis; the structure also gives clues as to how 4,6-alpha-glucanotransferases may have evolved further toward sucrose utilization instead of starch. Further supported by genomic, phylogenetic, and in vivo studies, we propose that dietary changes involving starch (and starch derivatives) and sucrose intake were critical factors during the evolution of 4,6-alpha-GTs and glucansucrases from alpha-amylases, allowing oral bacteria to produce extracellular polymers that contribute to biofilm formation from different substrates.
-
Authors: Pijning, T., Dijkstra, B.W., Bai, Y., Gangoiti-Munecas, J., Dijkhuizen, L.
+
Crystal Structure of 4,6-alpha-Glucanotransferase Supports Diet-Driven Evolution of GH70 Enzymes from alpha-Amylases in Oral Bacteria.,Bai Y, Gangoiti J, Dijkstra BW, Dijkhuizen L, Pijning T Structure. 2016 Dec 21. pii: S0969-2126(16)30390-2. doi:, 10.1016/j.str.2016.11.023. PMID:28065507<ref>PMID:28065507</ref>
-
Description: 4,6-alpha-glucanotransferase GTFB from Lactobacillus reuteri 121
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Gangoiti-Munecas, J]]
+
<div class="pdbe-citations 5jbd" style="background-color:#fffaf0;"></div>
-
[[Category: Dijkstra, B.W]]
+
== References ==
-
[[Category: Pijning, T]]
+
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Dextransucrase]]
[[Category: Bai, Y]]
[[Category: Bai, Y]]
[[Category: Dijkhuizen, L]]
[[Category: Dijkhuizen, L]]
 +
[[Category: Dijkstra, B W]]
 +
[[Category: Gangoiti-Munecas, J]]
 +
[[Category: Pijning, T]]
 +
[[Category: 6-alpha-glucanotransferase]]
 +
[[Category: Gh70]]
 +
[[Category: Starch conversion]]
 +
[[Category: Transferase]]

Revision as of 16:23, 18 January 2017

4,6-alpha-glucanotransferase GTFB from Lactobacillus reuteri 121

5jbd, resolution 1.80Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools