User:Charli Barbet/Sandbox

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 12: Line 12:
- <scene name='75/750264/Sh3/2'>Another SH3 domain (156-215) 60 amino acids long</scene>
- <scene name='75/750264/Sh3/2'>Another SH3 domain (156-215) 60 amino acids long</scene>
-
<scene name='75/750264/Sh2/1'>'''SH2 DOMAIN'''</scene>:
+
<scene name='75/750264/Sh2/1'>SH2 DOMAIN</scene>:
SH2 domain is a domain that is approximately 100 amino acids long with a very conserved structure. Identified in several human and rodent proteins such as [https://en.wikipedia.org/wiki/Phosphatase phosphatases], [https://en.wikipedia.org/wiki/Transcription_factor transcription factor], or [https://en.wikipedia.org/wiki/Signal_transducing_adaptor_protein adaptor] like protein as Grb2 for instance.
SH2 domain is a domain that is approximately 100 amino acids long with a very conserved structure. Identified in several human and rodent proteins such as [https://en.wikipedia.org/wiki/Phosphatase phosphatases], [https://en.wikipedia.org/wiki/Transcription_factor transcription factor], or [https://en.wikipedia.org/wiki/Signal_transducing_adaptor_protein adaptor] like protein as Grb2 for instance.
This domain is ubiquitous in several protein implicated in cellular signaling pathways.Typically, the SH2 domain specifically recognizes sites with '''phosphorylated tyrosine''' in different types of proteins. SH2 can, for instance bind to the intracellular region of EGF leading in turn, to the formation of protein signalization complexes. This binding and the role of SH2 is very important in '''the conversion of an extra-cellular signal in an intra-cellular signal''' giving rise to diversified cellular responses or the expression of specific genes. It is also important to note that the SH2 domain can bind to other SH2 domains. Nevertheless, a mutation in the specific binding site of SH2 can impede the interaction of two proteins and thus the formation of a protein complex. Therefore, mutations in SH2 can give rise to cellular dysfunction and lead to several diseases. <ref>PMID: 18767163</ref>
This domain is ubiquitous in several protein implicated in cellular signaling pathways.Typically, the SH2 domain specifically recognizes sites with '''phosphorylated tyrosine''' in different types of proteins. SH2 can, for instance bind to the intracellular region of EGF leading in turn, to the formation of protein signalization complexes. This binding and the role of SH2 is very important in '''the conversion of an extra-cellular signal in an intra-cellular signal''' giving rise to diversified cellular responses or the expression of specific genes. It is also important to note that the SH2 domain can bind to other SH2 domains. Nevertheless, a mutation in the specific binding site of SH2 can impede the interaction of two proteins and thus the formation of a protein complex. Therefore, mutations in SH2 can give rise to cellular dysfunction and lead to several diseases. <ref>PMID: 18767163</ref>
-
<scene name='75/750264/Sh3/1'>'''SH3 DOMAIN'''</scene>:
+
<scene name='75/750264/Sh3/1'>SH3 DOMAIN</scene>:
The SH3 domain is approximately 50 amino acid long. Largely '''expressed in proteins associated to the membrane'''. The domain is made of 5 to 6 β-sheets arranged in two antiparallel β-sheets. The linking region between the two β-sheets is made of α helices. This special conformation allows the '''arrangement of a hydrophobic pocket in which the ligand can bind.''' Typically, the binding region has a '''motif rich in Prolines: PXXP'''. This binding allows the formation of multi-proteins complexes involved in the translation and conversion of extra-cellular signals. The binding is thus largely involved in gene expression and protein concentration. <ref>PMID: 1279434</ref>
The SH3 domain is approximately 50 amino acid long. Largely '''expressed in proteins associated to the membrane'''. The domain is made of 5 to 6 β-sheets arranged in two antiparallel β-sheets. The linking region between the two β-sheets is made of α helices. This special conformation allows the '''arrangement of a hydrophobic pocket in which the ligand can bind.''' Typically, the binding region has a '''motif rich in Prolines: PXXP'''. This binding allows the formation of multi-proteins complexes involved in the translation and conversion of extra-cellular signals. The binding is thus largely involved in gene expression and protein concentration. <ref>PMID: 1279434</ref>

Revision as of 11:39, 23 January 2017

Grb2 (1gri)

Caption for this structure

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

Charli Barbet

Personal tools