User:Pierre Rossignol/Sandbox

Pseudomonas aeruginosa is Gram-negative bacteria. It is an opportunistic microorganism which established itself in vulnerable patients, like patients in intensive care units or those with cystic fibrosis. Pseudomonas aeruginosa is one of the major causes of Hospital-acquired infection worldwide and a serious threat to Public Health. ^[1]

Pseudomonas aeruginosa can colonize many natural environments like soil, water and skin, because of its ability to utilize a wide range of organic matter and cope with different environmental conditions. Pseudomonas aeruginosa colonizes human hosts, therefore it can use cysteine and methionine as sulfur source. ^[2]

Function

The thiol dioxygenation is the initial oxidation step which allow a thiol to catabolic and biosynthetic pathway. A family of specific non-heme mononuclear iron proteins catalyses the reaction. Each enzyme reacts efficiently with just one substrate. This family includes : cysteine dioxygenase, cysteamine dioxygenase, mercaptosuccinate dioxygenase and 3-mercaptopropionate dioxygenase. (article)

The thiol dioxygenase of Pseudomonas aeruginosa (p3MDO) is a 3-mercaptopropionate (3-MPA) dioxygenase with a secondary cysteine dioxygenase activity. Therefore it can also be named 3-mercaptopropionate dioxygenase or cysteine dioxygenase.

This is the first exemple of cysteine dioxigenase (CDO) homologue which utilizes a second substrate with near stochiometric coupling to dioxigen consumption. (article)

The cysteine dioxygenase (p3MDO?) homologue from Pseudomonas aeruginosa is expressed in low levels so this metabolic pathway is present in this organism.

The physiological role is unclear.

Catalytic activity:

The thiol dioxygenase catalyses the dioxygenation of 3-mercaptopropionate (3-MPA) to 3-sulfinopropionate.

3-mercaptopropionate + O2 = 3-sulfinopropionate (uniProt)

It also oxidizes cysteine to cysteine sulfinate.

This enzyme has a marked preference for 3-mercaptopronionate, that’s why this enzyme is describe as a 3-mercaptopropionate dioxygenase. (article)

Image:Proteoppedia.jpg

Disease

Relevance

Structural highlights

Thiol dioxygenases all share a common structure described as a 6-stranded β-barrel core, and a canonical cupin or “jelly roll” β-barrel that is formed with cupin motif 1, an intermotif region, and cupin motif 2 each forming two of the core six β-strands in the folded protein structure.^[3]

The Thiol dioxygenase from Pseudomonas aeruginosa is made of 4 chains (named , , , )^[4]. Each chain is made of 211 amino acids and has a molecular weight of 23 kDa. For its secondary structures, it has and ^[5]. The different binding sites with an atom of iron are three different Histidines : , and .

Furthermore, this proteins has two different domains which are a RmlC-like jelly roll fold and a RmlC-like cupin domain^[6].