User:Ophelie Lefort/Sandbox
From Proteopedia
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The residue F190 obstructs the active site which could normally not links a P1-Arg. However, a study <ref>Natascha C. Perera, Karl-Heinz Wiesmüller, Maria Torp Larsen, Beate Schacher, Peter Eickholz, Niels Borregaard and Dieter E. Jenne NSP4 Is Stored in Azurophil Granules and Released by Activated Neutrophils as Active Endoprotease with Restricted Specificity DOI: https://doi.org/10.4049/jimmunol.1301293</ref> considered the possibility that the two residues S216 and F190 of the active site can form a flexible gate which allows P1-Arg to enter. Then, the link between the active site and P1-Arg can be stabilized by a salt bridge interaction between S1-D226 and P1-Arg. | The residue F190 obstructs the active site which could normally not links a P1-Arg. However, a study <ref>Natascha C. Perera, Karl-Heinz Wiesmüller, Maria Torp Larsen, Beate Schacher, Peter Eickholz, Niels Borregaard and Dieter E. Jenne NSP4 Is Stored in Azurophil Granules and Released by Activated Neutrophils as Active Endoprotease with Restricted Specificity DOI: https://doi.org/10.4049/jimmunol.1301293</ref> considered the possibility that the two residues S216 and F190 of the active site can form a flexible gate which allows P1-Arg to enter. Then, the link between the active site and P1-Arg can be stabilized by a salt bridge interaction between S1-D226 and P1-Arg. | ||
The hypothesis of the flexible gate was confirmed by the same study. The mutations of S216 only, F190 only or both together show a forced full open gate is more efficient than a forced partially open gate. | The hypothesis of the flexible gate was confirmed by the same study. The mutations of S216 only, F190 only or both together show a forced full open gate is more efficient than a forced partially open gate. | ||
- | The conclusion is that the protease domain is a trypsin-like domain.[[Image:Active site.jpg]] | + | The conclusion is that the protease domain is a trypsin-like domain.[[Image:Active site.jpg | thumb]] |
Revision as of 18:33, 26 January 2017
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References
[1] NSP4 is stored in azurophil granules and released by activated neutrophils as active endoprotease with restricted specificity, NCBI
[2] NSP4, an elastase-related protease in human neutrophils with arginine specificity, NCBI
[3] Tailor-made inflammation: how neutrophil serine proteases modulate the inflammatory response, NCBI
[4] Role of neutrophils in innate immunity: a systems biology-level approach, NCBI
[5] Neutrophils: Their Role in Innate and Adaptive Immunity, NCBI
[6] Neutrophil extracellular traps kill bacteria, NCBI
[7] Tailor-made inflammation: how neutrophil serine proteases modulate the inflammatory response, NCBI
- ↑ S.. Jack Lin, Ken C. Dong, Charles Eigenbrot, Menno van Lookeren Campagne, Daniel Kirchhofer Structures of Neutrophil Serine Protease 4 Reveal an Unusual Mechanism of Substrate Recognition by a Trypsin-Fold Protease DOI: http://dx.doi.org/10.1016/j.str.2014.07.008
- ↑ Natascha C. Perera, Karl-Heinz Wiesmüller, Maria Torp Larsen, Beate Schacher, Peter Eickholz, Niels Borregaard and Dieter E. Jenne NSP4 Is Stored in Azurophil Granules and Released by Activated Neutrophils as Active Endoprotease with Restricted Specificity DOI: https://doi.org/10.4049/jimmunol.1301293