5ml8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5ml8 is ON HOLD until Paper Publication
+
==The crystal structure of PDE6D in complex to inhibitor-4==
 +
<StructureSection load='5ml8' size='340' side='right' caption='[[5ml8]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5ml8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ML8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ML8 FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=V98:~{N}4-[(4-CHLOROPHENYL)METHYL]-~{N}4-CYCLOPENTYL-~{N}1-(PHENYLMETHYL)-~{N}1-(PIPERIDIN-4-YLMETHYL)BENZENE-1,4-DISULFONAMIDE'>V98</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ml8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ml8 OCA], [http://pdbe.org/5ml8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ml8 RCSB], [http://www.ebi.ac.uk/pdbsum/5ml8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ml8 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/PDE6D_HUMAN PDE6D_HUMAN]] Acts as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude and does so by decreasing the nucleotide dissociation rate. Stabilizes Arl3-GTP by decreasing the nucleotide dissociation (By similarity).
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Small-molecule inhibition of the interaction between the KRas oncoprotein and the chaperone PDE6delta impairs KRas spatial organization and signaling in cells. However, despite potent binding in vitro (KD &lt;10 nm), interference with Ras signaling and growth inhibition require 5-20 mum compound concentrations. We demonstrate that these findings can be explained by fast release of high-affinity inhibitors from PDE6delta by the release factor Arl2. This limitation is overcome by novel highly selective inhibitors that bind to PDE6delta with up to 7 hydrogen bonds, resulting in picomolar affinity. Their release by Arl2 is greatly decreased, and representative compounds selectively inhibit growth of KRas mutated and -dependent cells with the highest activity recorded yet. Our findings indicate that very potent inhibitors of the KRas-PDE6delta interaction may impair the growth of tumors driven by oncogenic KRas.
-
Authors: Fansa, E.K., Martin-Gago, P., Waldmann, H., Wittinghofer, A.
+
A PDE6delta-KRas Inhibitor Chemotype with up to Seven H-Bonds and Picomolar Affinity that Prevents Efficient Inhibitor Release by Arl2.,Martin-Gago P, Fansa EK, Klein CH, Murarka S, Janning P, Schurmann M, Metz M, Ismail S, Schultz-Fademrecht C, Baumann M, Bastiaens PI, Wittinghofer A, Waldmann H Angew Chem Int Ed Engl. 2017 Jan 20. doi: 10.1002/anie.201610957. PMID:28106325<ref>PMID:28106325</ref>
-
Description: The crystal structure of PDE6D in complex to inhibitor-4
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Waldmann, H]]
+
<div class="pdbe-citations 5ml8" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Fansa, E K]]
[[Category: Martin-Gago, P]]
[[Category: Martin-Gago, P]]
 +
[[Category: Waldmann, H]]
[[Category: Wittinghofer, A]]
[[Category: Wittinghofer, A]]
-
[[Category: Fansa, E.K]]
+
[[Category: Arl2]]
 +
[[Category: Farnesylated kra]]
 +
[[Category: Lipid binding protein]]
 +
[[Category: Plasma membrane]]
 +
[[Category: Prenyl binding protein]]

Revision as of 17:57, 1 February 2017

The crystal structure of PDE6D in complex to inhibitor-4

5ml8, resolution 2.60Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools