1sjw

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|PDB= 1sjw |SIZE=350|CAPTION= <scene name='initialview01'>1sjw</scene>, resolution 1.35&Aring;
|PDB= 1sjw |SIZE=350|CAPTION= <scene name='initialview01'>1sjw</scene>, resolution 1.35&Aring;
|SITE=
|SITE=
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|LIGAND= <scene name='pdbligand=NGV:METHYL 5,7-DIHYDROXY-2-METHYL-4,6,11-TRIOXO-3,4,6,11-TETRAHYDROTETRACENE-1-CARBOXYLATE'>NGV</scene>
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|LIGAND= <scene name='pdbligand=NGV:METHYL+5,7-DIHYDROXY-2-METHYL-4,6,11-TRIOXO-3,4,6,11-TETRAHYDROTETRACENE-1-CARBOXYLATE'>NGV</scene>
|ACTIVITY=
|ACTIVITY=
|GENE= SnoaL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=38314 Streptomyces nogalater])
|GENE= SnoaL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=38314 Streptomyces nogalater])
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|DOMAIN=
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|RELATEDENTRY=
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1sjw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sjw OCA], [http://www.ebi.ac.uk/pdbsum/1sjw PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1sjw RCSB]</span>
}}
}}
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[[Category: Sultana, A.]]
[[Category: Sultana, A.]]
[[Category: Wang, J S.]]
[[Category: Wang, J S.]]
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[[Category: NGV]]
 
[[Category: aldol condensation]]
[[Category: aldol condensation]]
[[Category: anthracycline]]
[[Category: anthracycline]]
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[[Category: structural proteomics in europe]]
[[Category: structural proteomics in europe]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:05:52 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:43:05 2008''

Revision as of 20:43, 30 March 2008

Image:1sjw.gif


PDB ID 1sjw

Drag the structure with the mouse to rotate
, resolution 1.35Å
Ligands:
Gene: SnoaL (Streptomyces nogalater)
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml



Structure of polyketide cyclase SnoaL


Overview

SnoaL belongs to a family of small polyketide cyclases, which catalyse ring closure steps in the biosynthesis of polyketide antibiotics produced in Streptomyces. Several of these antibiotics are among the most used anti-cancer drugs currently in use. The crystal structure of SnoaL, involved in nogalamycin biosynthesis, with a bound product, has been determined to 1.35 A resolution. The fold of the subunit can be described as a distorted alpha+beta barrel, and the ligand is bound in the hydrophobic interior of the barrel. The 3D structure and site-directed mutagenesis experiments reveal that the mechanism of the intramolecular aldol condensation catalysed by SnoaL is different from that of the classical aldolases, which employ covalent Schiff base formation or a metal ion cofactor. The invariant residue Asp121 acts as an acid/base catalyst during the reaction. Stabilisation of the enol(ate) intermediate is mainly achieved by the delocalisation of the electron pair over the extended pi system of the substrate. These polyketide cyclases thus form of family of enzymes with a unique catalytic strategy for aldol condensation.

About this Structure

1SJW is a Single protein structure of sequence from Streptomyces nogalater. Full crystallographic information is available from OCA.

Reference

Structure of the polyketide cyclase SnoaL reveals a novel mechanism for enzymatic aldol condensation., Sultana A, Kallio P, Jansson A, Wang JS, Niemi J, Mantsala P, Schneider G, EMBO J. 2004 May 5;23(9):1911-21. Epub 2004 Apr 8. PMID:15071504

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