1t4k
From Proteopedia
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|PDB= 1t4k |SIZE=350|CAPTION= <scene name='initialview01'>1t4k</scene>, resolution 2.50Å | |PDB= 1t4k |SIZE=350|CAPTION= <scene name='initialview01'>1t4k</scene>, resolution 2.50Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=ZN:ZINC ION'>ZN</scene> | + | |LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> |
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY= | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1t4k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t4k OCA], [http://www.ebi.ac.uk/pdbsum/1t4k PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1t4k RCSB]</span> | ||
}} | }} | ||
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[[Category: Wilson, I A.]] | [[Category: Wilson, I A.]] | ||
[[Category: Zhu, X.]] | [[Category: Zhu, X.]] | ||
| - | [[Category: ZN]] | ||
[[Category: aldol reaction]] | [[Category: aldol reaction]] | ||
[[Category: aldolase antibody]] | [[Category: aldolase antibody]] | ||
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[[Category: reactive lysine]] | [[Category: reactive lysine]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:51:11 2008'' |
Revision as of 20:51, 30 March 2008
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| , resolution 2.50Å | |||||||
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal Structure of Unliganded Aldolase Antibody 93F3 Fab
Overview
Catalytic aldolase antibodies, generated by reactive immunization, catalyze the aldol reaction with the efficiency of natural enzymes, but accept a much broader range of substrates. Two separate groups of aldolase antibodies that catalyze the same aldol reactions with antipodal selectivity were analyzed by comparing their amino acid sequences with their crystal structures, site-directed mutagenesis data, and computational docking of the transition states of the aldol reaction. The crystal structure of aldolase antibody 93F3 Fab' at 2.5A resolution revealed a combining site with two lysine residues, including LysL89 that reacts to form the covalent enamine intermediate. In contrast, antibody 33F12 has one active site lysine, LysH93. The reactive lysine residues in each group of antibodies are differentially located on the heavy and light chain variable regions in pseudo-symmetric opposite orientations, but both within highly hydrophobic environments. Thus, the defining feature for the observed enantioselectivities of these aldolase antibody catalysts is the respective location and relative disposition of the reactive lysine residues within the active sites of these catalysts.
About this Structure
1T4K is a Protein complex structure of sequences from Mus musculus. Full crystallographic information is available from OCA.
Reference
The origin of enantioselectivity in aldolase antibodies: crystal structure, site-directed mutagenesis, and computational analysis., Zhu X, Tanaka F, Hu Y, Heine A, Fuller R, Zhong G, Olson AJ, Lerner RA, Barbas CF 3rd, Wilson IA, J Mol Biol. 2004 Nov 5;343(5):1269-80. PMID:15491612
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