5uj2
From Proteopedia
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- | '''Unreleased structure''' | ||
- | + | ==Crystal structure of HCV NS5B genotype 2A JFH-1 isolate with S15G E86Q E87Q C223H V321I mutations and Delta8 neta hairpoin loop deletion in complex with GS-639476 (diphsohate version of GS-9813), Mn2+ and symmetrical primer template 5'-AUAAAUUU== | |
+ | <StructureSection load='5uj2' size='340' side='right' caption='[[5uj2]], [[Resolution|resolution]] 2.90Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[5uj2]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UJ2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5UJ2 FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8B4:(1S)-1-(4-AMINOIMIDAZO[2,1-F][1,2,4]TRIAZIN-7-YL)-1,4-ANHYDRO-2-DEOXY-2-FLUORO-5-O-[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]-2-METHYL-D-RIBITOL'>8B4</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> | ||
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4wtg|4wtg]], [[4wtd|4wtd]]</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5uj2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5uj2 OCA], [http://pdbe.org/5uj2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5uj2 RCSB], [http://www.ebi.ac.uk/pdbsum/5uj2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5uj2 ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | A series of 2'-fluorinated C-nucleosides were prepared and tested for anti-HCV activity. Among them, the triphosphate of 2'-fluoro-2'-C-methyl adenosine C-nucleoside (15) was a potent and selective inhibitor of the NS5B polymerase and maintained activity against the S282T resistance mutant. A number of phosphoramidate prodrugs were then prepared and evaluated leading to the identification of the 1-aminocyclobutane-1-carboxylic acid isopropyl ester variant (53) with favorable pharmacokinetic properties including efficient liver delivery in animals. | ||
- | + | Discovery of a 2'-fluoro-2'-C-methyl C-nucleotide HCV polymerase inhibitor and a phosphoramidate prodrug with favorable properties.,Kirschberg TA, Metobo S, Clarke MO, Aktoudianakis V, Babusis D, Barauskas O, Birkus G, Butler T, Byun D, Chin G, Doerffler E, Edwards TE, Fenaux M, Lee R, Lew W, Mish MR, Murakami E, Park Y, Squires NH, Tirunagari N, Wang T, Whitcomb M, Xu J, Yang H, Ye H, Zhang L, Appleby TC, Feng JY, Ray AS, Cho A, Kim CU Bioorg Med Chem Lett. 2017 Feb 20. pii: S0960-894X(17)30170-1. doi:, 10.1016/j.bmcl.2017.02.037. PMID:28274633<ref>PMID:28274633</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
+ | <div class="pdbe-citations 5uj2" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Appleby, T C]] | ||
+ | [[Category: Edwards, T E]] | ||
+ | [[Category: III, D Fox]] | ||
+ | [[Category: McGrath, M E]] | ||
+ | [[Category: Murakami, E]] | ||
+ | [[Category: Rey, A]] | ||
+ | [[Category: Gs-639476]] | ||
+ | [[Category: Gs7977-dp]] | ||
+ | [[Category: Hcv]] | ||
+ | [[Category: Immune system-rna complex]] | ||
+ | [[Category: Ns5b]] | ||
+ | [[Category: Primer]] | ||
+ | [[Category: Rdrp]] | ||
+ | [[Category: Resistance mutation]] | ||
+ | [[Category: Sofosbuvir]] | ||
+ | [[Category: Sovaldi]] | ||
+ | [[Category: Template]] | ||
+ | [[Category: Viral]] | ||
+ | [[Category: Virunon]] |
Revision as of 16:47, 22 March 2017
Crystal structure of HCV NS5B genotype 2A JFH-1 isolate with S15G E86Q E87Q C223H V321I mutations and Delta8 neta hairpoin loop deletion in complex with GS-639476 (diphsohate version of GS-9813), Mn2+ and symmetrical primer template 5'-AUAAAUUU
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Categories: Appleby, T C | Edwards, T E | III, D Fox | McGrath, M E | Murakami, E | Rey, A | Gs-639476 | Gs7977-dp | Hcv | Immune system-rna complex | Ns5b | Primer | Rdrp | Resistance mutation | Sofosbuvir | Sovaldi | Template | Viral | Virunon