5x54
From Proteopedia
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of the Keap1 Kelch domain in complex with a tetrapeptide== | |
| + | <StructureSection load='5x54' size='340' side='right' caption='[[5x54]], [[Resolution|resolution]] 2.30Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5x54]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X54 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5X54 FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr> | ||
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5x54 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x54 OCA], [http://pdbe.org/5x54 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x54 RCSB], [http://www.ebi.ac.uk/pdbsum/5x54 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x54 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Keap1 constitutively binds to the transcription factor Nrf2 to promote its degradation, resulting in negative modulation of genes involved in cellular protection against oxidative stress. Keap1 is increasingly recognized as an attractive target for treating diseases involving oxidative stress, including cancer, atherosclerosis, diabetes, arthritis, and neurodegeneration. We used phage-display peptide screening to identify a tetrapeptide showing moderate binding affinity, which inhibits the interaction between Nrf2 and Keap1. The tetrapeptide does not include an ETGE motif, which is a commonly found consensus sequence in known peptidic inhibitors. In addition to affinity parameters, IC50, KD, and thermodynamic parameters, the crystal structure of the complex was determined to elucidate the binding conformation. The binding interactions resemble those of known small-molecule inhibitors as opposed to those of substrates and peptidic inhibitors. Although the tetrapeptide's affinity is not very high, our results may help facilitate the designing of small-molecule inhibitors during lead generation in drug discovery. | ||
| - | + | Discovery of a Kelch-like ECH-associated protein 1-inhibitory tetrapeptide and its structural characterization.,Sogabe S, Sakamoto K, Kamada Y, Kadotani A, Fukuda Y, Sakamoto JI Biochem Biophys Res Commun. 2017 Mar 14. pii: S0006-291X(17)30495-3. doi:, 10.1016/j.bbrc.2017.03.038. PMID:28315327<ref>PMID:28315327</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| - | + | <div class="pdbe-citations 5x54" style="background-color:#fffaf0;"></div> | |
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Kadotani, A]] | [[Category: Kadotani, A]] | ||
[[Category: Lane, W]] | [[Category: Lane, W]] | ||
| + | [[Category: Snell, G]] | ||
[[Category: Sogabe, S]] | [[Category: Sogabe, S]] | ||
| + | [[Category: Complex]] | ||
| + | [[Category: Inhibitor]] | ||
| + | [[Category: Kelch domain]] | ||
| + | [[Category: Nrf2]] | ||
| + | [[Category: Oxidative stress]] | ||
| + | [[Category: Transcription]] | ||
| + | [[Category: Transcription-transcription inhibitor complex]] | ||
Revision as of 14:06, 29 March 2017
Crystal structure of the Keap1 Kelch domain in complex with a tetrapeptide
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